Charm++ parallel programming system

["Chao Mei" <chaomei2 AT illinois.edu>]

Please try "mpi-linux-x86_64" instead of "mpi-linux".

-Chao Mei

--------------------------------------------------
From: "Swartz, Brent A. (GSFC-610.3)[ADVANCED MANAGEMENT TECHNOLOGY]" 
<brent.a.swartz AT nasa.gov>
Sent: Monday, September 27, 2010 5:11 PM
To: 
<charm AT cs.uiuc.edu>
Cc: "Oloso, Amidu O. (GSFC-610.3)[ADVANCED MANAGEMENT TECHNOLOGY]" 
<amidu.o.oloso AT nasa.gov>
Subject: [charm] Charm 6.2.2 build

> Hello,
>
> In order to install the latest NAMD on our cluster here I am attempting to
> build charm for our Intel Xeon EM64T processor (Nehamlem, Harpertown,
> Woodcrest, Dempsey) cluster running SUSE Linux here at NASA GSFC. I want 
> to
> use the Intel compilers (icc, ifort) and Intel MPI to communicate between
> the nodes.  So I have the following modules loaded on our system:
>
> module load comp/intel-11.1.072 mpi/impi-3.2.2.006
>
> baswartz@discover08:/discover/nobackup/baswartz/bench/NAS_BM_PGK/NAMD/NAMD_2
> .7b4_Source/charm-6.2.2> uname -a
> Linux discover08 2.6.16.60-0.42.5-smp #1 SMP Mon Aug 24 09:41:41 UTC 2009
> x86_64 x86_64 x86_64 GNU/Linux
>
> Then I attempt to build charm:
>
> env MPICXX=mpicxx ./build charm++ mpi-linux icc ifort --no-build-shared
> --with-production >& build.out.3
>
> If you like I can email you the entire build.out.3 file, but the main
> problems appear to be:
>
> ...
>
> ../bin/charmc  -optimize  -nobs -I. -o ../lib/libmemory-charmdebug.o
> -DCMK_MEMORY_BUILD_CHARMDEBUG memory.c || touch
> ../lib/libmemory-charmdebug.o
> memory-charmdebug.c(388): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning stack from %p (%d) to %p
> (%d)\n",begin_stack,begin_stack,end_stack,end_stack);
>                                                                  ^
>
> memory-charmdebug.c(388): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning stack from %p (%d) to %p
> (%d)\n",begin_stack,begin_stack,end_stack,end_stack);
>
> ^
>
> memory-charmdebug.c(401): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning data from %p (%d) to %p
> (%d)\n",info->begin_data,info->begin_data,info->end_data,info->end_data);
>                                                                      ^
>
> memory-charmdebug.c(401): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning data from %p (%d) to %p
> (%d)\n",info->begin_data,info->begin_data,info->end_data,info->end_data);
>
> ^
>
> memory-charmdebug.c(416): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning bss from %p (%d) to %p
> (%d)\n",info->begin_bss,info->begin_bss,info->end_bss,info->end_bss);
>                                                                    ^
>
> memory-charmdebug.c(416): warning #181: argument is incompatible with
> corresponding format string conversion
>    printf("scanning bss from %p (%d) to %p
> (%d)\n",info->begin_bss,info->begin_bss,info->end_bss,info->end_bss);
>
> ^
>
> memory-charmdebug.c(1321): warning #181: argument is incompatible with
> corresponding format string conversion
>    sprintf(buf,"slot size %d\n",sizeof(Slot));
>                                 ^
>
> memory-charmdebug.c(1542): error: expected an identifier
>  void setMemoryTypeChare(void *ptr) {
>                                     ^
>
> memory-charmdebug.c(1542): error: expected a ";"
>  void setMemoryTypeChare(void *ptr) {
>                                     ^
>
> memory-isomalloc.h(17): warning #12: parsing restarts here after previous
> syntax error
>  void *malloc_nomigrate(size_t size);
>                                     ^
>
> compilation aborted for memory.c (code 2)
> Fatal Error by charmc in directory
> /discover/nobackup/baswartz/bench/NAS_BM_PGK/NAMD/NAMD_2.7b4_Source/charm-6.
> 2.2/mpi-linux-ifort-icc/tmp
>   Command icc -fpic -I../bin/../include -D__CHARMC__=1 -I.
> -DCMK_MEMORY_BUILD_CHARMDEBUG -O -c memory.c -o
> ../lib/libmemory-charmdebug.o returned error code 2
>
> ...
>
> Running configure on i386-gcc
> ( cd QuickThreads ; /usr/bin/gmake qt  OPTS='-optimize  -nobs' ) || ( echo
> "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" 
> &&
> false )
> gmake[1]: Entering directory
> `/gpfsm/dnb33/baswartz/bench/NAS_BM_PGK/NAMD/NAMD_2.7b4_Source/charm-6.2.2/m
> pi-linux-ifort-icc/tmp/QuickThreads'
> rm -f qtmd.h
> ln -s md/i386.h qtmd.h
> ../../bin/charmc -seq -I. -o qt.o qt.c
> as -o qtmds.o md/i386.s
> md/i386.s: Assembler messages:
> md/i386.s:69: Error: suffix or operands invalid for `push'
> md/i386.s:70: Error: suffix or operands invalid for `push'
> md/i386.s:71: Error: suffix or operands invalid for `push'
> md/i386.s:72: Error: suffix or operands invalid for `push'
> md/i386.s:77: Error: suffix or operands invalid for `push'
> md/i386.s:78: Error: suffix or operands invalid for `push'
> md/i386.s:79: Error: suffix or operands invalid for `push'
> md/i386.s:81: Error: suffix or operands invalid for `call'
> md/i386.s:84: Error: suffix or operands invalid for `pop'
> md/i386.s:85: Error: suffix or operands invalid for `pop'
> md/i386.s:86: Error: suffix or operands invalid for `pop'
> md/i386.s:87: Error: suffix or operands invalid for `pop'
> md/i386.s:98: Error: suffix or operands invalid for `push'
> md/i386.s:99: Error: suffix or operands invalid for `call'
> md/i386.s:100: Error: suffix or operands invalid for `pop'
> md/i386.s:102: Error: suffix or operands invalid for `call'
> md/i386.s:104: Error: suffix or operands invalid for `push'
> md/i386.s:105: Error: suffix or operands invalid for `push'
> md/i386.s:106: Error: suffix or operands invalid for `call'
> gmake[1]: *** [qt] Error 1
> gmake[1]: Leaving directory
> `/gpfsm/dnb33/baswartz/bench/NAS_BM_PGK/NAMD/NAMD_2.7b4_Source/charm-6.2.2/m
> pi-linux-ifort-icc/tmp/QuickThreads'
> Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64
> gmake: *** [QUICK_THREADS] Error 1
> -------------------------------------------------
> Charm++ NOT BUILT. Either cd into mpi-linux-ifort-icc/tmp and try
> to resolve the problems yourself, visit
> http://charm.cs.uiuc.edu/
> for more information. Otherwise, email the developers at 
> charm AT cs.uiuc.edu
>
> I suspect I am missing something in the charm build... Any Suggestions?
>
> I also attempted to build with:
> env MPICXX=mpicxx ./build charm++ mpi-linux-x86_64 ifort --no-build-shared
> --with-production >& build.out.2
>
> But that apparently is for Opterons.
>
> Thanks,
>
> - Brent
>
> --
> _______________________________________________________
> Brent Swartz
> Scientific Application Computational Scientist
> Software Integration & Visualization Office - Code 610.3
> NASA Goddard Space Flight Center
>
> (715)726-1405  
> Brent.A.Swartz AT nasa.gov
> _______________________________________________________
>
>
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