Charm++ parallel programming system

[Laércio Lima Pilla <llpilla AT inf.ufrgs.br>]

If I am not wrong, I had a similar issue in the past regarding the static linking problem.

Could you try to change CMK_LD on src/arch/gemini_gni-crayxe/conv-mach.sh to include "-dynamic"?

Best regards,

2013/8/29 Phil Miller <mille121 AT illinois.edu>

The undefined references to 'assert' are the result of a recent
change, that will be fixed quickly.

On Thu, Aug 29, 2013 at 2:07 PM, Bo Zhang <zhang416 AT indiana.edu> wrote:
> Hello Jim,
>
> I swap and load the modules as you suggested. And I rebuilt the package
> several times:
>
> Thu Aug 29 14:18:14 EDT 2013
> Using the following build command:
> ./build charm++ gemini_gni-crayxe craycc   hugepages   -j16
> --with-production
>
> Thu Aug 29 14:48:27 EDT 2013
> Using the following build command:
> ./build charm++ gemini_gni-crayxe craycc  smp   persistent hugepages   -j16
> --with-production
>
> Thu Aug 29 14:59:20 EDT 2013
> Using the following build command:
> ./build charm++ gemini_gni-crayxe   smp   persistent hugepages   -j16
> --with-production
>
> Each time, the built was successful. But I still cannot make the
> simplesayhello example. For the last set of build options I used, I got the
> following the messages:
>
> zhang416@login1:~/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello>
> make
> ../../../bin/charmc   hello.ci
> ../../../bin/charmc  -c hello.C
> ../../../bin/charmc  -language charm++ -o hello hello.o
> ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
> `skt_lookup_ip':
> sockRoutines.c:(.text+0x3a3): warning: Using 'gethostbyname' in statically
> linked applications requires at runtime the shared libraries from the glibc
> version used for linking
> ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
> `compressFloatingPoint':
> persist-comm.c:(.text+0x2f3): undefined reference to `assert'
> ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
> `compressDouble':
> persist-comm.c:(.text+0x451): undefined reference to `assert'
> collect2: error: ld returned 1 exit status
> Fatal Error by charmc in directory
> /N/u/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello
>    Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
> -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
> -I/opt/cray-hss-devel/7.0.0/include
> -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
> -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
> -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -D_REENTRANT -rdynamic -o
> hello -L../../../bin/../lib -I../../../bin/../include
> ../../../bin/../lib/libldb-rand.o hello.o moduleinit22274.o
> ../../../bin/../lib/libmemory-default.o
> ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
> -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt
> -lpthread -lrt -lz -ldl -lm returned error code 1
> charmc exiting...
> make: *** [hello] Error 1
>
> I look forward to hearing further instructions from you. Thank you.
>
> Bo
>
>
>
> On Aug 29, 2013, at 2:30 PM, Jim Phillips wrote:
>
>
> For NAMD we use these modules:
>
> module swap PrgEnv-cray PrgEnv-gnu
> module load rca
> module load craype-hugepages8M
>
> And these sets of options:
>
> gemini_gni-crayxe hugepages persistent
>
> gemini_gni-crayxe hugepages persistent smp
>
> -Jim
>
>
> On Thu, 29 Aug 2013, Phil Miller wrote:
>
> Going on what I can remember and intuit from what I see here, you may
>
> need to add the build option 'hugepages' to your build command. You
>
> should also ensure that you have one of the craype-hugepages* modules
>
> loaded.
>
>
> I'm not sure why this error appeared though, and will check with the
>
> rest of the team on how we can prevent it in the future.
>
>
> Thanks, and I hope that helps
>
>
> Phil
>
>
> On Thu, Aug 29, 2013 at 12:59 PM, Bo Zhang <zhang416 AT indiana.edu> wrote:
>
> Dear developing team:
>
>
> This is Bo Zhang from Indiana University. I am trying to install charm++
>
> locally on a Cray XE6/XK7 machine. The build command used is:
>
>
> './build charm++ gemini_gni-crayxe craycc      -j16  --with-production'
>
>
> After running the command, it shows that charm++ was built successfully.
>
> Next, I followed the suggestion to try the sample program
>
> 'gemini_gni-crayxe-craycc/tests/charm++/simplearrayhello', but the make was
>
> terminated with error.
>
>
> zhang416@login1:~/repository/charm/tests/charm++/simplearrayhello> make
>
> ../../../bin/charmc   hello.ci
>
> ../../../bin/charmc  -c hello.C
>
> ../../../bin/charmc  -language charm++ -o hello hello.o
>
> /opt/cray/xe-sysroot/4.1.40/usr/lib64/libhugetlbfs.a(hugeutils.o): In
>
> function `gethugepagesize':
>
> /usr/src/packages/BUILD/cray-libhugetlbfs-2.11/hugeutils.c:863: multiple
>
> definition of `gethugepagesize'
>
> ../../../bin/../lib/cray_tlbhack.o:(.text+0x0): first defined here
>
> /opt/cray/xe-sysroot/4.1.40/usr/lib64/libpthread.a(sem_open.o): In function
>
> `sem_open':
>
> /usr/src/packages/BUILD/glibc-2.11.3/nptl/sem_open.c:333: warning: the use
>
> of `mktemp' is dangerous, better use `mkstemp'
>
> ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
>
> `skt_lookup_ip':
>
> /N/hd00/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-craycc/tmp/sockRoutines.c:295:
>
> warning: Using 'gethostbyname' in statically linked applications requires at
>
> runtime the shared libraries from the glibc version used for linking
>
> Fatal Error by charmc in directory
>
> /N/u/zhang416/BigRed2/repository/charm/tests/charm++/simplearrayhello
>
>   Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
>
> -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
>
> -I/opt/cray-hss-devel/7.0.0/include
>
> -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
>
> -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
>
> -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -o hello
>
> -L../../../bin/../lib -I../../../bin/../include
>
> ../../../bin/../lib/libldb-rand.o hello.o moduleinit44124.o
>
> ../../../bin/../lib/libmemory-default.o
>
> ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
>
> -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt -ldl
>
> -lrt ../../../bin/../lib/cray_tlbhack.o -lm returned error code 1
>
> charmc exiting...
>
> make: *** [hello] Error 1
>
>
> Would you please let me know how to resolve this issue? Thank you very much.
>
>
> Sincerely,
>
>
> Bo
>
>
>
>
>
>
>
>
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--

Laércio LIMA PILLA

PhD Candidate at 

- Federal University of Rio Grande do Sul (UFRGS) - Brazil

- University of Grenoble - France
Email: laercio.pilla AT inf.ufrgs.br or laercio.lima.pilla AT gmail.com 
Tel: +55 (54) 9973 6313
Website: www.inf.ufrgs.br/~llpilla