Charm++ parallel programming system

[Phil Miller <mille121 AT illinois.edu>]

I just pushed the fix for the 'undefined reference to assert' error.
If you wish to continue using the development version, please pull and
rebuild.

As Jim mentioned, it may be easier to simply use the released version
of Charm++ instead.

On Thu, Aug 29, 2013 at 2:09 PM, Phil Miller 
<mille121 AT illinois.edu>
 wrote:
> The undefined references to 'assert' are the result of a recent
> change, that will be fixed quickly.
>
> On Thu, Aug 29, 2013 at 2:07 PM, Bo Zhang 
> <zhang416 AT indiana.edu>
>  wrote:
>> Hello Jim,
>>
>> I swap and load the modules as you suggested. And I rebuilt the package
>> several times:
>>
>> Thu Aug 29 14:18:14 EDT 2013
>> Using the following build command:
>> ./build charm++ gemini_gni-crayxe craycc   hugepages   -j16
>> --with-production
>>
>> Thu Aug 29 14:48:27 EDT 2013
>> Using the following build command:
>> ./build charm++ gemini_gni-crayxe craycc  smp   persistent hugepages   -j16
>> --with-production
>>
>> Thu Aug 29 14:59:20 EDT 2013
>> Using the following build command:
>> ./build charm++ gemini_gni-crayxe   smp   persistent hugepages   -j16
>> --with-production
>>
>> Each time, the built was successful. But I still cannot make the
>> simplesayhello example. For the last set of build options I used, I got the
>> following the messages:
>>
>> zhang416@login1:~/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello>
>> make
>> ../../../bin/charmc   hello.ci
>> ../../../bin/charmc  -c hello.C
>> ../../../bin/charmc  -language charm++ -o hello hello.o
>> ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
>> `skt_lookup_ip':
>> sockRoutines.c:(.text+0x3a3): warning: Using 'gethostbyname' in statically
>> linked applications requires at runtime the shared libraries from the glibc
>> version used for linking
>> ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
>> `compressFloatingPoint':
>> persist-comm.c:(.text+0x2f3): undefined reference to `assert'
>> ../../../bin/../lib/libconv-util.a(persist-comm.o): In function
>> `compressDouble':
>> persist-comm.c:(.text+0x451): undefined reference to `assert'
>> collect2: error: ld returned 1 exit status
>> Fatal Error by charmc in directory
>> /N/u/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-hugepages-persistent-smp/tests/charm++/simplearrayhello
>>    Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
>> -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
>> -I/opt/cray-hss-devel/7.0.0/include
>> -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
>> -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
>> -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -D_REENTRANT -rdynamic -o
>> hello -L../../../bin/../lib -I../../../bin/../include
>> ../../../bin/../lib/libldb-rand.o hello.o moduleinit22274.o
>> ../../../bin/../lib/libmemory-default.o
>> ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
>> -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt
>> -lpthread -lrt -lz -ldl -lm returned error code 1
>> charmc exiting...
>> make: *** [hello] Error 1
>>
>> I look forward to hearing further instructions from you. Thank you.
>>
>> Bo
>>
>>
>>
>> On Aug 29, 2013, at 2:30 PM, Jim Phillips wrote:
>>
>>
>> For NAMD we use these modules:
>>
>> module swap PrgEnv-cray PrgEnv-gnu
>> module load rca
>> module load craype-hugepages8M
>>
>> And these sets of options:
>>
>> gemini_gni-crayxe hugepages persistent
>>
>> gemini_gni-crayxe hugepages persistent smp
>>
>> -Jim
>>
>>
>> On Thu, 29 Aug 2013, Phil Miller wrote:
>>
>> Going on what I can remember and intuit from what I see here, you may
>>
>> need to add the build option 'hugepages' to your build command. You
>>
>> should also ensure that you have one of the craype-hugepages* modules
>>
>> loaded.
>>
>>
>> I'm not sure why this error appeared though, and will check with the
>>
>> rest of the team on how we can prevent it in the future.
>>
>>
>> Thanks, and I hope that helps
>>
>>
>> Phil
>>
>>
>> On Thu, Aug 29, 2013 at 12:59 PM, Bo Zhang 
>> <zhang416 AT indiana.edu>
>>  wrote:
>>
>> Dear developing team:
>>
>>
>> This is Bo Zhang from Indiana University. I am trying to install charm++
>>
>> locally on a Cray XE6/XK7 machine. The build command used is:
>>
>>
>> './build charm++ gemini_gni-crayxe craycc      -j16  --with-production'
>>
>>
>> After running the command, it shows that charm++ was built successfully.
>>
>> Next, I followed the suggestion to try the sample program
>>
>> 'gemini_gni-crayxe-craycc/tests/charm++/simplearrayhello', but the make was
>>
>> terminated with error.
>>
>>
>> zhang416@login1:~/repository/charm/tests/charm++/simplearrayhello>
>>  make
>>
>> ../../../bin/charmc   hello.ci
>>
>> ../../../bin/charmc  -c hello.C
>>
>> ../../../bin/charmc  -language charm++ -o hello hello.o
>>
>> /opt/cray/xe-sysroot/4.1.40/usr/lib64/libhugetlbfs.a(hugeutils.o): In
>>
>> function `gethugepagesize':
>>
>> /usr/src/packages/BUILD/cray-libhugetlbfs-2.11/hugeutils.c:863: multiple
>>
>> definition of `gethugepagesize'
>>
>> ../../../bin/../lib/cray_tlbhack.o:(.text+0x0): first defined here
>>
>> /opt/cray/xe-sysroot/4.1.40/usr/lib64/libpthread.a(sem_open.o): In function
>>
>> `sem_open':
>>
>> /usr/src/packages/BUILD/glibc-2.11.3/nptl/sem_open.c:333: warning: the use
>>
>> of `mktemp' is dangerous, better use `mkstemp'
>>
>> ../../../bin/../lib/libconv-util.a(sockRoutines.o): In function
>>
>> `skt_lookup_ip':
>>
>> /N/hd00/zhang416/BigRed2/repository/charm/gemini_gni-crayxe-craycc/tmp/sockRoutines.c:295:
>>
>> warning: Using 'gethostbyname' in statically linked applications requires 
>> at
>>
>> runtime the shared libraries from the glibc version used for linking
>>
>> Fatal Error by charmc in directory
>>
>> /N/u/zhang416/BigRed2/repository/charm/tests/charm++/simplearrayhello
>>
>>   Command CC -I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include
>>
>> -I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include
>>
>> -I/opt/cray-hss-devel/7.0.0/include
>>
>> -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include
>>
>> -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include
>>
>> -I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include -o hello
>>
>> -L../../../bin/../lib -I../../../bin/../include
>>
>> ../../../bin/../lib/libldb-rand.o hello.o moduleinit44124.o
>>
>> ../../../bin/../lib/libmemory-default.o
>>
>> ../../../bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y
>>
>> -lconv-core -lconv-util ../../../bin/../lib/custom_partitioner.o -lckqt 
>> -ldl
>>
>> -lrt ../../../bin/../lib/cray_tlbhack.o -lm returned error code 1
>>
>> charmc exiting...
>>
>> make: *** [hello] Error 1
>>
>>
>> Would you please let me know how to resolve this issue? Thank you very 
>> much.
>>
>>
>> Sincerely,
>>
>>
>> Bo
>>
>>
>>
>>
>>
>>
>>
>>
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>>
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