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[charm] How to make a force field for phosphorylation a protein which has Aspartate ?


Chronological Thread 
  • From: <joy6677 AT sina.com>
  • To: "charm" <charm AT cs.uiuc.edu>
  • Subject: [charm] How to make a force field for phosphorylation a protein which has Aspartate ?
  • Date: Fri, 02 May 2014 18:12:18 +0800
  • List-archive: <http://lists.cs.uiuc.edu/pipermail/charm/>
  • List-id: CHARM parallel programming system <charm.cs.uiuc.edu>

Hello ,everyone!

I want to do phosphorylation to our protein through VMD. Our protein has Aspartate, which need to be phosphorylate.for that there is no force field to use, so any one of your friend can make a force filed for it ? let me tell you, there is a force field which is used for such phosphorylation.http://www.youtube.com/watch?v=fwDYAcdc6ZQ 

BUT that force field is only to phosphorylate Seriene in protein not Aspartate.


Thank you very much!





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