charm AT lists.cs.illinois.edu
Subject: Charm++ parallel programming system
List archive
- From: Abhishek TYAGI <atyagiaa AT connect.ust.hk>
- To: Jim Phillips <jim AT ks.uiuc.edu>
- Cc: "charm AT cs.illinois.edu" <charm AT cs.illinois.edu>
- Subject: Re: [charm] [ppl] Charm install Error
- Date: Mon, 21 Dec 2015 15:39:18 +0000
- Accept-language: en-US
- Authentication-results: spf=none (sender IP is ) smtp.mailfrom=atyagiaa AT connect.ust.hk;
- Spamdiagnosticmetadata: NSPM
- Spamdiagnosticoutput: 1:23
Dear Jim,
For the NAMD-MPI compiling I am using NAMD-CSV source code. I want to compile
MPI version. The reason for compiling NAMD with MPI is to run "A Tutorial on
One-dimensional Replica-exchange Umbrella Sampling". According to this
tutorial mpirun will be implimented to execute REUS. Therefore, I am
compiling this version. The GPU cluster have the configuration to use
infiband.
(https://itsc.ust.hk/services/academic-teaching-support/high-performance-computing/gpu-cluster/hardware/)
The command I had tried is as follows:
[atyagiaa@login-0
charm-6.7.0]$ env MPICXX=mpicxx ./build charm++ mpi-linux-x86_64
--with-production
[atyagiaa@login-0
charm-6.7.0]$ which mpicxx
/usr/local/pgi/linux86-64/2013/mpi2/mpich/bin/mpicxx.
The details of compilation of charm were attached herewith the mail.
(For general molecular simulations, I am using NAMD 2.11b1 multicore-CUDA
build.)
Thanks and regards
Abhi
________________________________________
From: Jim Phillips
<jim AT ks.uiuc.edu>
Sent: Monday, December 21, 2015 10:02 PM
To: Abhishek TYAGI
Cc:
charm AT cs.illinois.edu
Subject: Re: [ppl] [charm] Charm install Error
Also, you should be using verbs-smp or net-ibverbs-smp on a GPU cluster.
Jim
On Mon, 21 Dec 2015, Phil Miller wrote:
> Hi Abhi,
>
> Could you please provide the following extra information:
> - what underlying compiler does your mpicxx call?
> - what was the output of the configure script at the beginning of the build
> process?
>
> With that, hopefully we can help resolve this.
>
> Phil
>
> On Mon, Dec 21, 2015 at 4:08 AM, Abhishek TYAGI
> <atyagiaa AT connect.ust.hk>
> wrote:
>
>> Hi,
>>
>>
>> I am trying to install charm-6.7.0 on GPU cluster here in our university.
>> But I got the following error, I tried to change the input information,
>> still the same error is coming, I am trying to compile NAMD for MPI on the
>> cluster. For your information, mpirun and mpiexec were already installed on
>> the cluster. As a user I have limited access. The error is as
>>
>>
>> ../../../../bin/charmc -O -DCMK_OPTIMIZE=1 -o
>> ../../../../lib/libmoduleCkMulticast.a ckmulticast.o
>> ar: creating ../../../../lib/libmoduleCkMulticast.a
>> /bin/cp CkMulticast.decl.h ../../../../include
>> /bin/cp CkMulticast.def.h ../../../../include
>> gmake[1]: Leaving directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/multicast'
>> /usr/bin/gmake -C libs/ck-libs/pythonCCS
>> gmake[1]: Entering directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'
>> (CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \
>> if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional
>> OPTS='-O -DCMK_OPTIMIZE=1 ' || exit 1); fi)
>> gmake[2]: Entering directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'
>> gmake[2]: Nothing to be done for `conditional'.
>> gmake[2]: Leaving directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'
>> gmake[1]: Leaving directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'
>> /usr/bin/gmake -C libs/ck-libs/io
>> gmake[1]: Entering directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/io'
>> gmake[1]: Nothing to be done for `all'.
>> gmake[1]: Leaving directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/io'
>> /usr/bin/gmake -C libs/ck-libs/ckloop
>> gmake[1]: Entering directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop'
>> ../../../../bin/charmc -O -DCMK_OPTIMIZE=1 -lpthread -I../../../../tmp -o
>> CkLoop.o CkLoop.C
>> "CkLoop.h", line 105: error: identifier "__sync_add_and_fetch" is undefined
>> return __sync_add_and_fetch(&curChunkIdx, 1);
>> ^
>>
>> "CkLoop.h", line 119: error: identifier "__sync_add_and_fetch" is undefined
>> __sync_add_and_fetch(&finishFlag, counter);
>> ^
>>
>> "CkLoop.h", line 264: warning: statement is unreachable
>> return NULL;
>> ^
>>
>> "CkLoop.C", line 18: error: identifier "__thread" is undefined
>> static __thread pthread_cond_t thdCondition; //the signal var of each
>> pthread to be notified
>> ^
>>
>> "CkLoop.C", line 18: error: "pthread_cond_t" has already been declared in
>> the
>> current scope
>> static __thread pthread_cond_t thdCondition; //the signal var of each
>> pthread to be notified
>> ^
>>
>> "CkLoop.C", line 18: error: expected a ";"
>> static __thread pthread_cond_t thdCondition; //the signal var of each
>> pthread to be notified
>> ^
>>
>> "CkLoop.C", line 19: error: identifier "__thread" is undefined
>> static __thread pthread_mutex_t thdLock; //the lock associated with the
>> condition variables
>> ^
>>
>> "CkLoop.C", line 19: error: "pthread_mutex_t" has already been declared in
>> the
>> current scope
>> static __thread pthread_mutex_t thdLock; //the lock associated with the
>> condition variables
>> ^
>>
>> "CkLoop.C", line 19: error: expected a ";"
>> static __thread pthread_mutex_t thdLock; //the lock associated with the
>> condition variables
>> ^
>>
>> "CkLoop.C", line 27: error: variable "pthread_mutex_t" is not a type name
>> static pthread_mutex_t **allLocks = NULL;
>> ^
>>
>> "CkLoop.C", line 28: error: variable "pthread_cond_t" is not a type name
>> static pthread_cond_t **allConds = NULL;
>> ^
>>
>> "CkLoop.C", line 64: error: identifier "thdLock" is undefined
>> pthread_mutex_init(&thdLock, NULL);
>> ^
>>
>> "CkLoop.C", line 65: error: identifier "thdCondition" is undefined
>> pthread_cond_init(&thdCondition, NULL);
>> ^
>>
>> "CkLoop.C", line 70: error: identifier "__sync_add_and_fetch" is undefined
>> __sync_add_and_fetch(&gCrtCnt, 1);
>> ^
>>
>> "CkLoop.C", line 93: warning: missing return statement at end of non-void
>> function "ndhThreadWork"
>> }
>> ^
>>
>> "CkLoop.C", line 98: error: expected an expression
>> allLocks = (pthread_mutex_t **)malloc(sizeof(void *)*numThreads);
>> ^
>>
>> "CkLoop.C", line 98: error: expected a ";"
>> allLocks = (pthread_mutex_t **)malloc(sizeof(void *)*numThreads);
>> ^
>>
>> "CkLoop.C", line 99: error: expected an expression
>> allConds = (pthread_cond_t **)malloc(sizeof(void *)*numThreads);
>> ^
>>
>> "CkLoop.C", line 99: error: expected a ";"
>> allConds = (pthread_cond_t **)malloc(sizeof(void *)*numThreads);
>> ^
>>
>> "CkLoop.def.h", line 88: warning: variable "newmsg" was declared but never
>> referenced
>> CharmNotifyMsg *newmsg = (CharmNotifyMsg *)this;
>> ^
>>
>> "CkLoop.def.h", line 123: warning: variable "newmsg" was declared but never
>> referenced
>> HelperNotifyMsg *newmsg = (HelperNotifyMsg *)this;
>> ^
>>
>> "CkLoop.def.h", line 158: warning: variable "newmsg" was declared but never
>> referenced
>> DestroyNotifyMsg *newmsg = (DestroyNotifyMsg *)this;
>> ^
>>
>> "CkLoop.C", line 38: warning: function "HelperOnCore" was declared but
>> never
>> referenced
>> static int HelperOnCore() {
>> ^
>>
>> 17 errors detected in the compilation of "CkLoop.C".
>> Fatal Error by charmc in directory
>> /d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop
>> Command mpicxx -DCMK_GFORTRAN -I../../../../bin/../include
>> -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -I../../../../tmp -O -c CkLoop.C -o
>> CkLoop.o returned error code 2
>> charmc exiting...
>> gmake[1]: *** [CkLoop.o] Error 1
>> gmake[1]: Leaving directory
>> `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop'
>> gmake: *** [ckloop] Error 2
>>
>> Please suggest me what to do?
>>
>>
>> Thanks in advance
>>
>> Abhi
>>
>>
>> Abhishek Tyagi
>>
>> PhD Student
>>
>> Chemical and Biomolecular Engineering
>>
>> Hong Kong University of Science and Technology
>>
>> Clear Water Bay, Hong Kong
>>
>>
>>
>
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\f0\fs22 \cf0 \CocoaLigature0 [atyagiaa@login-0 charm-6.7.0]$ which mpicxx\
/usr/local/pgi/linux86-64/2013/mpi2/mpich/bin/mpicxx\
[atyagiaa@login-0 charm-6.7.0]$ env MPICXX=mpicxx ./build charm++ mpi-linux-x86_64 --with-production\
Creating dir: mpi-linux-x86_64\
Creating dir: mpi-linux-x86_64/tmp\
Copying src/scripts/Makefile to mpi-linux-x86_64/tmp\
Soft-linking over bin\
Soft-linking over lib\
Soft-linking over lib_so\
Soft-linking over include\
Soft-linking over tmp\
Generating mpi-linux-x86_64/tmp/conv-mach-pre.sh\
Generating mpi-linux-x86_64/tmp/conv-mach-opt.h, conv-mach-opt.sh\
Performing '/usr/bin/gmake basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in mpi-linux-x86_64/tmp\
pwd\
/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp\
find . -type l -exec rm \{\} \\;\
rm -rf QuickThreads\
rm -rf libs\
rm -rf ../bin ; mkdir ../bin\
if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \\\
cp -f ../../src/arch/`cat .vdir | awk -F- '\{print $2\}'`/unix2nt* ../bin; \\\
cp -f ../../src/arch/win32/createlink.exe ../bin; \\\
fi\
rm -rf ../lib ; mkdir ../lib\
rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso\
rm -rf ../examples\
rm -rf ../tests\
rm -rf ../doc ; ln -s ../doc ../doc\
../../src/scripts/gatherflat ../../src/scripts .\
./gatherflat ../../src/conv-core .\
./gatherflat ../../src/conv-ldb .\
./gatherflat ../../src/conv-ccs .\
./gatherflat ../../src/conv-perf .\
./gatherflat ../../src/ck-core .\
./gatherflat ../../src/ck-perf .\
./gatherflat ../../src/ck-tune .\
./gatherflat ../../src/ck-ldb .\
./gatherflat ../../src/ck-cp .\
./gatherflat ../../src/langs/simplemsg .\
./gatherflat ../../src/langs/pvmc .\
./gatherflat ../../src/langs/bluegene .\
./gatherflat ../../src/langs/f90charm .\
./gatherflat ../../src/xlatcpm .\
./gathertree ../../src/QuickThreads QuickThreads\
./gathertree ../../src/libs libs\
./gathertree ../../src/arch/util .\
./gathertree ../../src/util .\
./gathertree ../../src/langs langs\
./gathertree ../../src/langs/jade langs/jade\
./gathertree ../../src/arch/common .\
./gathertree ../../src/arch/`cat .gdir` .\
test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new` . || true\
./gatherflat ../../src/arch/`cat .vdir` .\
./gathertree ../../src/../examples ../examples\
./gathertree ../../src/../tests ../tests\
rm -f ../bin/dep.pl ; cp dep.pl ../bin/\
chmod +x charmc\
./system_ln ../tmp/charmc ../bin/\
rm -rf ../include ; mkdir ../include\
./system_ln ../tmp/conv-*.*h ../include\
./system_ln ../tmp/cc-*.*h ../include\
./system_ln ../tmp/conv-mach-opt.sh ../include\
if [ -x ./special.sh ] ; then SRCBASE=../../src ./special.sh ; fi\
if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi\
touch dirs+sources\
/usr/bin/gmake charmxi\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp'\
./configure --disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats\
Error checking is disabled\
Statistics collection is disabled\
Charm tracing is disabled\
Charm tracing communication thread is disabled\
CharmDebug is disabled\
Charm record/replay is disabled\
CCS is enabled\
Charm control point is disabled\
Charm LB user data is disabled\
Setting load balancing timer type as 'double'\
checking machine name... mpi-linux-x86_64\
checking "cp command as"... cp -p\
checking "C++ compiler as"... "mpicxx -DCMK_GFORTRAN "\
checking "whether C++ compiler works"... "ok"\
checking "C++ linker as"... "mpicxx -DCMK_GFORTRAN "\
checking "whether linker works"... "ok"\
checking "Native C++ compiler as"... "g++ -m64 -fPIC "\
checking "Sequential C++ compiler as"... "mpicxx -DCMK_GFORTRAN"\
checking "whether compiler accept -fno-stack-protector"... "no"\
checking "whether C++ compiler supports variadic templates without flags"... "yes"\
Setting charm++ envelope refnum field to unsigned short\
Configuring support for message priorities of arbitrary size (bitvectors)\
checking "whether compiler generates code for 64-bit"... "yes"\
checking "whether compiler supports std::alignment_of"... "no"\
checking "whether has values.h "... "yes"\
checking "whether has stdint.h "... "yes"\
checking "whether has malloc.h "... "yes"\
checking "whether has alloca.h "... "yes"\
checking "whether has regex.h "... "yes"\
checking "whether long long works"... "yes"\
checking "whether __int64 works"... "no"\
checking "whether __int128 (128-bit integer) works"... "no"\
checking "whether __int128_t (128-bit integer) works"... "no"\
checking "whether long double works"... "yes"\
checking "whether ucontext has FPU pointer"... "yes"\
checking "whether ucontext uses uc_regs"... "no"\
checking "whether ucontext has pointer (v_regs) of vector type"... "no"\
checking "whether ibverbs ibv_port_attr has link_layer field"... "yes"\
checking "whether inline works in C"... "yes"\
checking "whether C++ signed char and char differ"... "yes"\
checking "whether C++ allows declaration of varsize array"... "yes"\
checking "whether typeinfo/typeid works"... "ok"\
checking "whether std::iterator_traits is defined"... "ok"\
checking "whether std::distance is defined"... "ok"\
checking "whether std::inserter is defined"... "ok"\
checking "whether std::unordered_map is defined"... "no"\
checking "whether anon structs are permitted"... "yes"\
checking "whether operator delete can be overloaded in same class"... "ok"\
checking "whether offsetof is defined"... "yes"\
checking "whether GCC x86 assembly works"... "yes"\
checking "whether GCC x86 assembly for atomic increment works"... "yes"\
checking "whether GCC IA64 assembly works"... "no"\
checking "whether asm eieio assembly works"... "no"\
checking "whether __thread (Thread Local Storage) is supported"... "no"\
checking "whether synchronization primitives (__sync_add_and_fetch) works in C"... "no"\
checking "whether synchronization primitives (__sync_synchronize) works in C"... "no"\
checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works in C"... "no"\
checking "whether switching TLS register (64-bit) is supported"... "yes"\
checking "whether build on MPI"... "yes"\
checking "whether need to specify MPI library"... "no"\
checking "whether MPI_Init_thread is supported"... "yes"\
checking "whether macro conflicts occurs due to C++ MPI bindings"... "no"\
checking "whether getrusage accepts RUSAGE_THREAD"... "yes"\
checking "whether has asctime"... "yes"\
checking "whether has log2"... "yes"\
checking "whether has sqrtf"... "yes"\
checking "whether has fabsf"... "yes"\
checking "whether has mkstemp"... "yes"\
checking "whether has system"... "yes"\
checking "whether has sync()"... "yes"\
checking "whether has fsync()"... "yes"\
checking "whether has fdatasync()"... "yes"\
checking "whether has sbrk"... "yes"\
checking "whether has _setjmp/_longjmp"... "yes"\
checking "whether has mstats"... "no"\
checking "whether has mallinfo"... "yes"\
checking "whether has popen"... "yes"\
checking "whether has poll"... "yes"\
checking "whether has getpagesize"... "yes"\
checking "whether has getpid"... "yes"\
checking "whether has kill"... "yes"\
checking "whether has setpriority"... "yes"\
checking "whether to use signal-safe system() "... "no"\
checking "whether sched_setaffinity call exists"... "yes"\
checking "whether pthread_setaffinity_np call exists"... "yes"\
checking "whether pthread_spin_lock exists"... "yes"\
checking "whether bindprocessor call exists"... "no"\
checking "whether dlopen links without -ldl"... "no"\
checking "whether dlopen links with -ldl"... "yes"\
checking "whether gethostname call exists"... "yes"\
checking "whether getProcAddress works"... "no"\
checking "whether has socklen_t"... "yes"\
checking "whether getifaddrs call exists"... "yes"\
checking "whether the mmap() syscall exists"... "yes"\
checking "whether mmap() accepts MAP_ANON"... "yes"\
checking "whether mmap() accepts MAP_NORESERVE"... "yes"\
checking "whether has get_myaddress"... "yes"\
checking "whether has mprotect"... "yes"\
checking "whether glibc backtrace works"... "no"\
checking "whether has sleep "... "yes"\
checking "whether has usleep "... "yes"\
checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "yes"\
checking "whether has zlib"... "yes"\
checking "whether has elf.h "... "yes"\
checking "whether has Multiprocessing.h for Apple "... "no"\
checking "whether ntohl is available"... "yes"\
checking "whether has libjpeg"... "yes"\
checking "whether Python is installed"... "yes"\
checking "whether can build shared library"... "yes"\
checking "whether can build shared library with MPI"... "yes"\
checking for sync... sync \
checking "F77 compiler as"... "/usr/bin/gfortran -fPIC -fno-second-underscore -fdollar-ok"\
checking "whether Fortran 77 compiler works"... "yes"\
checking "F90 compiler as"... "/usr/bin/gfortran -fPIC -fno-second-underscore -fdollar-ok"\
checking "whether Fortran 90 compiler works"... "yes"\
checking subroutine name used by Fortran 90 compiler... ONESCORE\
checking Fortran 90 mod name is capital... "no"\
checking Fortran 90 mod name extension... "mod"\
configure: creating ./config.status\
config.status: creating libs/ck-libs/ampi/ampiCC\
config.status: creating libs/ck-libs/ampi/ampirun\
config.status: creating conv-autoconfig.h\
config.status: executing config-cleanup commands\
config.status: executing default commands\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-main.o ../../src/xlat-i/xi-main.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-grammar.tab.o ../../src/xlat-i/xi-grammar.tab.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -DYY_NEVER_INTERACTIVE -c -o xi-scan.o ../../src/xlat-i/xi-scan.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Template.o ../../src/xlat-i/xi-Template.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-AstNode.o ../../src/xlat-i/xi-AstNode.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Entry.o ../../src/xlat-i/xi-Entry.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Member.o ../../src/xlat-i/xi-Member.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Parameter.o ../../src/xlat-i/xi-Parameter.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-SdagConstruct.o ../../src/xlat-i/xi-SdagConstruct.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-BlockConstruct.o ../../src/xlat-i/xi-BlockConstruct.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Type.o ../../src/xlat-i/xi-Type.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Chare.o ../../src/xlat-i/xi-Chare.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Message.o ../../src/xlat-i/xi-Message.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Construct.o ../../src/xlat-i/xi-Construct.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Module.o ../../src/xlat-i/xi-Module.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-SdagCollection.o ../../src/xlat-i/xi-SdagCollection.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-Value.o ../../src/xlat-i/xi-Value.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-util.o ../../src/xlat-i/xi-util.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o sdag-globals.o ../../src/xlat-i/sdag/sdag-globals.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CSdagConstruct.o ../../src/xlat-i/sdag/CSdagConstruct.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CStateVar.o ../../src/xlat-i/sdag/CStateVar.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Atomic.o ../../src/xlat-i/sdag/constructs/Atomic.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Case.o ../../src/xlat-i/sdag/constructs/Case.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CaseList.o ../../src/xlat-i/sdag/constructs/CaseList.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Else.o ../../src/xlat-i/sdag/constructs/Else.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Forall.o ../../src/xlat-i/sdag/constructs/Forall.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o For.o ../../src/xlat-i/sdag/constructs/For.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o If.o ../../src/xlat-i/sdag/constructs/If.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o IntExpr.o ../../src/xlat-i/sdag/constructs/IntExpr.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o OList.o ../../src/xlat-i/sdag/constructs/OList.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Overlap.o ../../src/xlat-i/sdag/constructs/Overlap.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o SdagEntry.o ../../src/xlat-i/sdag/constructs/SdagEntry.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o SList.o ../../src/xlat-i/sdag/constructs/SList.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o Template.o ../../src/xlat-i/sdag/constructs/Template.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o When.o ../../src/xlat-i/sdag/constructs/When.C\
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o While.o ../../src/xlat-i/sdag/constructs/While.C\
../bin/charmc -host -language c++ -cp ../bin/ -o charmxi xi-main.o xi-grammar.tab.o xi-scan.o xi-Template.o xi-AstNode.o xi-Entry.o xi-Member.o xi-Parameter.o xi-SdagConstruct.o xi-BlockConstruct.o xi-Type.o xi-Chare.o xi-Message.o xi-Construct.o xi-Module.o xi-SdagCollection.o xi-Value.o xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o CParsedFile.o CStateVar.o Atomic.o Case.o CaseList.o Else.o Forall.o For.o If.o IntExpr.o OList.o Overlap.o SdagEntry.o SList.o Template.o When.o While.o\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp'\
/usr/bin/gmake headerlinks\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp'\
../bin/charmc -intrinsic -optimize -production ckcallback.ci && touch ckcallback.ci.stamp\
../bin/charmc -intrinsic -optimize -production DummyLB.ci && touch DummyLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GreedyLB.ci && touch GreedyLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production CommLB.ci && touch CommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RandCentLB.ci && touch RandCentLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RefineLB.ci && touch RefineLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RefineCommLB.ci && touch RefineCommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RotateLB.ci && touch RotateLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production DistributedLB.ci && touch DistributedLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production HybridLB.ci && touch HybridLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production ComboCentLB.ci && touch ComboCentLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RefineSwapLB.ci && touch RefineSwapLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production NeighborLB.ci && touch NeighborLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production OrbLB.ci && touch OrbLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production BlockLB.ci && touch BlockLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GreedyCommLB.ci && touch GreedyCommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production NodeLevelLB.ci && touch NodeLevelLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GraphPartLB.ci && touch GraphPartLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GraphBFTLB.ci && touch GraphBFTLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GridCommLB.ci && touch GridCommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GridCommRefineLB.ci && touch GridCommRefineLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production HbmLB.ci && touch HbmLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RefineKLB.ci && touch RefineKLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TempAwareCommLB.ci && touch TempAwareCommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TreeMatchLB.ci && touch TreeMatchLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GreedyAgentLB.ci && touch GreedyAgentLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production NeighborCommLB.ci && touch NeighborCommLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production PhasebyArrayLB.ci && touch PhasebyArrayLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RecBipartLB.ci && touch RecBipartLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production CommAwareRefineLB.ci && touch CommAwareRefineLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production AdaptiveLB.ci && touch AdaptiveLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production MetisLB.ci && touch MetisLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production ScotchLB.ci && touch ScotchLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TeamLB.ci && touch TeamLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production WSLB.ci && touch WSLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GridMetisLB.ci && touch GridMetisLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TempAwareGreedyLB.ci && touch TempAwareGreedyLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GridHybridSeedLB.ci && touch GridHybridSeedLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TopoCentLB.ci && touch TopoCentLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production GridHybridLB.ci && touch GridHybridLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TopoLB.ci && touch TopoLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production RefineTopoLB.ci && touch RefineTopoLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production TempAwareRefineLB.ci && touch TempAwareRefineLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckmarshall.ci && touch ckmarshall.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckarray.ci && touch ckarray.ci.stamp\
../bin/charmc -intrinsic -optimize -production cklocation.ci && touch cklocation.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckreduction.ci && touch ckreduction.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckarrayreductionmgr.ci && touch ckarrayreductionmgr.ci.stamp\
../bin/charmc -intrinsic -optimize -production tempo.ci && touch tempo.ci.stamp\
../bin/charmc -intrinsic -optimize -production waitqd.ci && touch waitqd.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckfutures.ci && touch ckfutures.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckcheckpoint.ci && touch ckcheckpoint.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckcheckpointstatus.ci && touch ckcheckpointstatus.ci.stamp\
../bin/charmc -intrinsic -optimize -production ckmemcheckpoint.ci && touch ckmemcheckpoint.ci.stamp\
../bin/charmc -intrinsic -optimize -production LBDatabase.ci && touch LBDatabase.ci.stamp\
../bin/charmc -intrinsic -optimize -production MetaBalancer.ci && touch MetaBalancer.ci.stamp\
../bin/charmc -intrinsic -optimize -production CentralLB.ci && touch CentralLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production NullLB.ci && touch NullLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production BaseLB.ci && touch BaseLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production NborBaseLB.ci && touch NborBaseLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production DistBaseLB.ci && touch DistBaseLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production HybridBaseLB.ci && touch HybridBaseLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production EveryLB.ci && touch EveryLB.ci.stamp\
../bin/charmc -intrinsic -optimize -production CommonLBs.ci && touch CommonLBs.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-summary.ci && touch trace-summary.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-projections.ci && touch trace-projections.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-simple.ci && touch trace-simple.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-controlPoints.ci && touch trace-controlPoints.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-Tau.ci && touch trace-Tau.ci.stamp\
../bin/charmc -intrinsic -optimize -production trace-utilization.ci && touch trace-utilization.ci.stamp\
../bin/charmc -intrinsic -optimize -production BlueGene.ci && touch BlueGene.ci.stamp\
../bin/charmc -intrinsic -optimize -production controlPoints.ci && touch controlPoints.ci.stamp\
../bin/charmc -intrinsic -optimize -production pathHistory.ci && touch pathHistory.ci.stamp\
../bin/charmc -intrinsic -optimize -production mpi-mainmodule.ci && touch mpi-mainmodule.ci.stamp\
Soft-linking headers...\
for hdr in AdaptiveLB.decl.h AdaptiveLB.h BGPTorus.h BGQTorus.h BaseLB.decl.h BaseLB.h BlockLB.decl.h BlockLB.h BlueGene.decl.h BlueGene.h CentralLB.decl.h CentralLB.h CentralLBMsg.h CkArray.decl.h CkArrayReductionMgr.decl.h CkCallback.decl.h CkCheckpoint.decl.h CkCheckpointStatus.decl.h CkFutures.decl.h CkLocation.decl.h CkMarshall.decl.h CkMemCheckpoint.decl.h CkReduction.decl.h ComboCentLB.decl.h ComboCentLB.h CommAwareRefineLB.decl.h CommAwareRefineLB.h CommLB.decl.h CommLB.h CommLBHeap.h CommonLBs.decl.h ControlPoints.decl.h DistBaseLB.decl.h DistBaseLB.h DistributedLB.decl.h DistributedLB.h DummyLB.decl.h DummyLB.h EveryLB.decl.h GraphBFTLB.decl.h GraphBFTLB.h GraphPartLB.decl.h GraphPartLB.h GreedyAgentLB.decl.h GreedyAgentLB.h GreedyCommLB.decl.h GreedyCommLB.h GreedyLB.decl.h GreedyLB.h GridCommLB.decl.h GridCommLB.h GridCommRefineLB.decl.h GridCommRefineLB.h GridHybridLB.decl.h GridHybridLB.h GridHybridSeedLB.decl.h GridHybridSeedLB.h GridMetisLB.decl.h GridMetisLB.h HbmLB.decl.h HbmLB.h HybridBaseLB.decl.h HybridBaseLB.h HybridLB.decl.h HybridLB.h HybridLBMsg.h LBAgent.h LBComm.h LBDBManager.h LBDatabase.decl.h LBDatabase.h LBMachineUtil.h LBOM.h LBObj.h LBProfit.h LBSimulation.h MetaBalancer.decl.h MetaBalancer.h MetisLB.decl.h MetisLB.h NborBaseLB.decl.h NborBaseLB.h NeighborCommLB.decl.h NeighborCommLB.h NeighborLB.decl.h NeighborLB.h NeighborLBMsg.h NodeLevelLB.decl.h NodeLevelLB.h NullLB.decl.h OrbLB.decl.h OrbLB.h PathHistory.decl.h PhasebyArrayLB.decl.h PhasebyArrayLB.h RTH.h RandCentLB.decl.h RandCentLB.h RecBipartLB.decl.h RecBipartLB.h RefineCommLB.decl.h RefineCommLB.h RefineKLB.decl.h RefineKLB.h RefineLB.decl.h RefineLB.h RefineSwapLB.decl.h RefineSwapLB.h RefineTopoLB.decl.h RefineTopoLB.h Refiner.h RefinerApprox.h RefinerComm.h RefinerTemp.h RotateLB.decl.h RotateLB.h SSE-Double.h SSE-Float.h ScotchLB.decl.h ScotchLB.h TeamLB.decl.h TeamLB.h TempAwareCommLB.decl.h TempAwareCommLB.h TempAwareGreedyLB.decl.h TempAwareGreedyLB.h TempAwareRefineLB.decl.h TempAwareRefineLB.h TopoCentLB.decl.h TopoCentLB.h TopoLB.decl.h TopoLB.h TopoManager.h TraceControlPoints.decl.h TraceProjections.decl.h TraceSimple.decl.h TraceSummary.decl.h TraceTau.decl.h TraceUtilization.decl.h TreeMatchLB.decl.h TreeMatchLB.h WSLB.decl.h WSLB.h XTTorus.h arrayRedistributor.h bgconverse.h bigsim_debug.h bigsim_logs.h bigsim_network.h bigsim_ooc.h bigsim_record.h bigsim_timing.h bitvecset.h blue-conv.h blue.h blue_defs.h blue_impl.h blue_types.h ccs-auth.c ccs-auth.h ccs-client.c ccs-client.h ccs-server.h charm++.h charm-api.h charm.h ck.h ckBIconfig.h ckIgetControl.h ckarray.h ckarrayindex.h ckarrayreductionmgr.h ckbitvector.h ckcallback-ccs.h ckcallback.h ckcausalmlog.h ckcheckpoint.h ckcomplex.h ckdirect.h ckdll.h ckevacuation.h ckfutures.h ckgraph.h ckgraphTemp.h ckhashtable.h ckheap.h ckimage.h cklists.h ckliststring.h cklocation.h cklocrec.h ckmemcheckpoint.h ckmessage.h ckmessagelogging.h ckmigratable.h ckobjQ.h ckobjid.h ckreduction.h cksection.h cksequence.h cksequence_factory.h cksequence_internal.h ckset.h ckstatistics.h ckstream.h cktiming.h ckvector3d.h cmidirect.h cmidirectmanytomany.h cmimemcpy.h cmipool.h cmiqueue.h cmitls.h controlPoints.h controlPointsf.h conv-autoconfig.h conv-ccs.h conv-common.h conv-config.h conv-config.sh conv-cpath.h conv-cpm.h conv-lists.h conv-mach.h conv-mach.sh conv-qd.h conv-random.h conv-trace.h converse.h cp_effects.h cpthreads.h crc32.h debug-charm.h debug-conv++.h debug-conv.h elements.h envelope-path.h envelope.h graph.h init.h lbdb++.h lbdb.h manager.h memory-isomalloc.h mempool.h middle-blue.h middle-conv.h middle.h mpi-interoperate.h mpi_main.decl.h msgq.h objid.h pathHistory.h persistent.h pup.h pup_c.h pup_cmialloc.h pup_mpi.h pup_paged.h pup_stl.h pup_toNetwork.h pup_toNetwork4.h pupf.h pvm3.h pvmc.h qd.h queueing.h rand48_replacement.h random_sequence.h readonly.h register.h sdag.h shared-alloc.h simd.h simplemsg.h sm.h sockRoutines.c sockRoutines.h stats.h strided_sequence.h tempo.decl.h tempo.h topology.h trace-bluegene.h trace-common.h trace-controlPoints.h trace-projections.h trace-simple.h trace.h vector2d.h waitqd.decl.h waitqd.h ; do test ! -f "../include/`basename $hdr`" && ./system_ln "../tmp/$hdr" ../include ; done\
touch headerlinks\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp'\
touch basics\
Performing '/usr/bin/gmake charm++ OPTS=-optimize -production QUIET=' in mpi-linux-x86_64/tmp\
../bin/charmc -optimize -production -I. -c -o DummyLB.o DummyLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleDummyLB.a DummyLB.o \
ar: creating ../lib/libmoduleDummyLB.a\
../bin/charmc -optimize -production -I. -c -o GreedyLB.o GreedyLB.C\
"GreedyLB.C", line 56: warning: variable "objCount" was declared but never\
referenced\
int obj, objCount, pe;\
^\
\
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyLB.a GreedyLB.o \
ar: creating ../lib/libmoduleGreedyLB.a\
../bin/charmc -optimize -production -I. -c -o CommLB.o CommLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleCommLB.a CommLB.o \
ar: creating ../lib/libmoduleCommLB.a\
../bin/charmc -optimize -production -I. -c -o RandCentLB.o RandCentLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleRandCentLB.a RandCentLB.o \
ar: creating ../lib/libmoduleRandCentLB.a\
../bin/charmc -optimize -production -I. -c -o RefineLB.o RefineLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleRefineLB.a RefineLB.o \
ar: creating ../lib/libmoduleRefineLB.a\
../bin/charmc -optimize -production -I. -c -o RefineCommLB.o RefineCommLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleRefineCommLB.a RefineCommLB.o \
ar: creating ../lib/libmoduleRefineCommLB.a\
cp -f libmoduleRefineCommLB.dep ../lib/\
../bin/charmc -optimize -production -I. -c -o RotateLB.o RotateLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleRotateLB.a RotateLB.o \
ar: creating ../lib/libmoduleRotateLB.a\
../bin/charmc -optimize -production -I. -c -o DistributedLB.o DistributedLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleDistributedLB.a DistributedLB.o \
ar: creating ../lib/libmoduleDistributedLB.a\
../bin/charmc -optimize -production -I. -c -o HybridLB.o HybridLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleHybridLB.a HybridLB.o \
ar: creating ../lib/libmoduleHybridLB.a\
../bin/charmc -optimize -production -I. -c -o ComboCentLB.o ComboCentLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleComboCentLB.a ComboCentLB.o \
ar: creating ../lib/libmoduleComboCentLB.a\
../bin/charmc -optimize -production -I. -c -o RefineSwapLB.o RefineSwapLB.C\
"RefineSwapLB.C", line 107: warning: variable "best_size" was set but never\
used\
double best_size = 0.0;\
^\
\
"RefineSwapLB.C", line 253: warning: variable "vert" was declared but never\
referenced\
int vert;\
^\
\
../bin/charmc -optimize -production -o ../lib/libmoduleRefineSwapLB.a RefineSwapLB.o \
ar: creating ../lib/libmoduleRefineSwapLB.a\
../bin/charmc -optimize -production -I. -c -o NeighborLB.o NeighborLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleNeighborLB.a NeighborLB.o \
ar: creating ../lib/libmoduleNeighborLB.a\
../bin/charmc -optimize -production -I. -c -o OrbLB.o OrbLB.C\
"OrbLB.C", line 242: warning: variable "j" was declared but never referenced\
int i,j;\
^\
\
../bin/charmc -optimize -production -o ../lib/libmoduleOrbLB.a OrbLB.o \
ar: creating ../lib/libmoduleOrbLB.a\
../bin/charmc -optimize -production -I. -c -o BlockLB.o BlockLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleBlockLB.a BlockLB.o \
ar: creating ../lib/libmoduleBlockLB.a\
../bin/charmc -optimize -production -I. -c -o GreedyCommLB.o GreedyCommLB.C\
../bin/charmc -optimize -production -I. -c -o manager.o manager.C\
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyCommLB.a GreedyCommLB.o manager.o\
ar: creating ../lib/libmoduleGreedyCommLB.a\
../bin/charmc -optimize -production -I. -c -o NodeLevelLB.o NodeLevelLB.C\
../bin/charmc -optimize -production -o ../lib/libmoduleNodeLevelLB.a NodeLevelLB.o \
ar: creating ../lib/libmoduleNodeLevelLB.a\
../bin/charmc -optimize -production -I. -c -o CommonLBs.o CommonLBs.C\
"CommonLBs.C", line 12: warning: function "CreateNoLB" was declared but never\
referenced\
static void CreateNoLB(void)\
^\
\
../bin/charmc -optimize -production -o ../lib/libmoduleCommonLBs.a CommonLBs.o DummyLB.o GreedyLB.o CommLB.o RandCentLB.o RefineLB.o RefineCommLB.o RotateLB.o DistributedLB.o HybridLB.o ComboCentLB.o RefineSwapLB.o NeighborLB.o OrbLB.o BlockLB.o GreedyCommLB.o NodeLevelLB.o manager.o \
ar: creating ../lib/libmoduleCommonLBs.a\
/usr/bin/gmake -C libs/ck-libs/completion\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/completion'\
../../../../bin/charmc -optimize -production -c completion.ci\
../../../../bin/charmc -optimize -production -I../../../../tmp -o completion.o completion.C\
../../../../bin/charmc -optimize -production -o ../../../../lib/libmodulecompletion.a completion.o \
ar: creating ../../../../lib/libmodulecompletion.a\
/bin/cp completion.decl.h ../../../../include\
/bin/cp completion.def.h ../../../../include\
/bin/cp completion.h ../../../../include\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/completion'\
../bin/charmc -seq -DCMK_NOT_USE_CONVERSE=1 -o sockRoutines-seq.o sockRoutines.c\
../bin/charmc -optimize -production -I. -c -o trace-common.o trace-common.C\
../bin/charmc -optimize -production -I. -c -o tracec.o tracec.C\
../bin/charmc -optimize -production -I. -c -o tracef.o tracef.C\
../bin/charmc -optimize -production -I. -c -o init.o init.C\
"init.C", line 436: warning: function "_printStats" was declared but never\
referenced\
static inline void _printStats(void) \{\}\
^\
\
"init.C", line 477: warning: function "_sendStats" was declared but never\
referenced\
static inline void _sendStats(void)\
^\
\
../bin/charmc -optimize -production -I. -c -o register.o register.C\
../bin/charmc -optimize -production -I. -c -o qd.o qd.C\
../bin/charmc -optimize -production -I. -c -o ck.o ck.C\
"ck.C", line 1735: warning: variable "numPes" was declared but never referenced\
int numPes;\
^\
\
"ck.C", line 1777: warning: variable "numPes" was declared but never referenced\
int numPes;\
^\
\
"ck.C", line 1890: warning: variable "numPes" was set but never used\
int numPes;\
^\
\
"ck.C", line 1934: warning: variable "numPes" was declared but never referenced\
int numPes;\
^\
\
"ck.C", line 2688: warning: pointless comparison of unsigned integer with zero\
if (e->getSrcPe()<0 || e->getSrcPe()>=CkNumPes()) return 0;\
^\
\
"ck.C", line 1614: warning: function "_prepareImmediateMsg" was declared but\
never referenced\
static inline int _prepareImmediateMsg(int eIdx,void *msg,const CkChareID *pCid)\
^\
\
../bin/charmc -optimize -production -I. -c -o msgalloc.o msgalloc.C\
../bin/charmc -optimize -production -I. -c -o ckfutures.o ckfutures.C\
"CkFutures.def.h", line 43: warning: variable "newmsg" was declared but never\
referenced\
CkQdMsg *newmsg = (CkQdMsg *)this;\
^\
\
"CkFutures.def.h", line 78: warning: variable "newmsg" was declared but never\
referenced\
FutureInitMsg *newmsg = (FutureInitMsg *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o ckIgetControl.o ckIgetControl.C\
../bin/charmc -optimize -production -I. -c -o debug-message.o debug-message.C\
../bin/charmc -optimize -production -I. -c -o debug-charm.o debug-charm.C\
../bin/charmc -optimize -production -I. -c -o ckcallback.o ckcallback.C\
../bin/charmc -optimize -production -I. -c -o cklocation.o cklocation.C\
"cklocation.C", line 259: warning: variable "i" was set but never used\
CKARRAYMAP_POPULATE_INITIAL(procNum(arrayHdl,idx)==thisPe);\
^\
\
"cklocation.C", line 764: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 761)\
myInt = i.data()[0] * nDim[0] * nDim[1] + i.data()[1] * nDim[1] + i.data()[2];\
^\
\
"cklocation.C", line 764: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 761)\
myInt = i.data()[0] * nDim[0] * nDim[1] + i.data()[1] * nDim[1] + i.data()[2];\
^\
\
"cklocation.C", line 764: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 761)\
myInt = i.data()[0] * nDim[0] * nDim[1] + i.data()[1] * nDim[1] + i.data()[2];\
^\
\
"cklocation.C", line 773: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 770)\
myInt = (int)(((short int*)i.data())[0] * nDim[0] * nDim[1] * nDim[2] +\
^\
\
"cklocation.C", line 774: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 770)\
((short int*)i.data())[1] * nDim[1] * nDim[2] +\
^\
\
"cklocation.C", line 775: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 770)\
((short int*)i.data())[2] * nDim[2] +\
^\
\
"cklocation.C", line 776: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 770)\
((short int*)i.data())[3]);\
^\
\
"cklocation.C", line 785: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 782)\
myInt = (int)(((short int*)i.data())[0] * nDim[0] * nDim[1] * nDim[2] * nDim[3] +\
^\
\
"cklocation.C", line 786: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 782)\
((short int*)i.data())[1] * nDim[1] * nDim[2] * nDim[3] +\
^\
\
"cklocation.C", line 787: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 782)\
((short int*)i.data())[2] * nDim[2] * nDim[3] +\
^\
\
"cklocation.C", line 788: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 782)\
((short int*)i.data())[3] * nDim[3] +\
^\
\
"cklocation.C", line 789: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 782)\
((short int*)i.data())[4]);\
^\
\
"cklocation.C", line 798: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
myInt = (int)(((short int*)i.data())[0] * nDim[0] * nDim[1] * nDim[2] * nDim[3] * nDim[4] +\
^\
\
"cklocation.C", line 799: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
((short int*)i.data())[1] * nDim[1] * nDim[2] * nDim[3] * nDim[4] +\
^\
\
"cklocation.C", line 800: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
((short int*)i.data())[2] * nDim[2] * nDim[3] * nDim[4] +\
^\
\
"cklocation.C", line 801: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
((short int*)i.data())[3] * nDim[3] * nDim[4] +\
^\
\
"cklocation.C", line 802: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
((short int*)i.data())[4] * nDim[4] +\
^\
\
"cklocation.C", line 803: warning: reference is to parameter "i" (declared at\
line 744) -- under old for-init scoping rules it would have been\
variable "i" (declared at line 795)\
((short int*)i.data())[5]);\
^\
\
"cklocation.C", line 747: warning: variable "dest" was declared but never\
referenced\
int dest;\
^\
\
"cklocation.C", line 1621: warning: variable "is_tentative" was declared but\
never referenced\
bool is_tentative;\
^\
\
"cklocation.C", line 2458: warning: variable "idx" was declared but never\
referenced\
CkArrayIndex &idx=*(CkArrayIndex *)keyp;\
^\
\
"cklocation.C", line 40: warning: function "idx2str(const CkArrayMessage *)"\
was declared but never referenced\
static const char *idx2str(const CkArrayMessage *m) \{\
^\
\
"cklocation.C", line 3676: warning: variable "rec2str" was declared but never\
referenced\
static const char *rec2str[]=\{\
^\
\
"cklocation.C", line 3719: warning: function "abort_out_of_bounds" was\
declared but never referenced\
static void abort_out_of_bounds(const CkArrayIndex &idx)\
^\
\
../bin/charmc -optimize -production -I. -c -o ckarray.o ckarray.C\
"CkArray.def.h", line 1486: warning: variable "newmsg" was declared but never\
referenced\
CkArrayCreatedMsg *newmsg = (CkArrayCreatedMsg *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o ckreduction.o ckreduction.C\
"CkReduction.def.h", line 259: warning: variable "newmsg" was declared but\
never referenced\
CkGroupCallbackMsg *newmsg = (CkGroupCallbackMsg *)this;\
^\
\
"CkReduction.def.h", line 636: warning: variable "newmsg" was declared but\
never referenced\
CkReductionMsg *newmsg = (CkReductionMsg *)this;\
^\
\
"CkReduction.def.h", line 671: warning: variable "newmsg" was declared but\
never referenced\
CkReductionNumberMsg *newmsg = (CkReductionNumberMsg *)this;\
^\
\
"CkReduction.def.h", line 706: warning: variable "newmsg" was declared but\
never referenced\
CkReductionInactiveMsg *newmsg = (CkReductionInactiveMsg *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o ckarrayreductionmgr.o ckarrayreductionmgr.C\
"ckarrayreductionmgr.C", line 124: warning: pointless comparison of unsigned\
integer with a negative constant\
if (m->userFlag!=-1)\
^\
\
../bin/charmc -optimize -production -I. -c -o tempo.o tempo.C\
"tempo.def.h", line 52: warning: variable "newmsg" was declared but never\
referenced\
TempoMessage *newmsg = (TempoMessage *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o waitqd.o waitqd.C\
../bin/charmc -optimize -production -I. -c -o LBDatabase.o LBDatabase.C\
../bin/charmc -optimize -production -I. -c -o MetaBalancer.o MetaBalancer.C\
"MetaBalancer.C", line 374: warning: variable "utilization_threshold" was\
declared but never referenced\
double utilization_threshold = UTILIZATION_THRESHOLD;\
^\
\
"MetaBalancer.C", line 397: warning: variable "tolerate_imb" was set but never\
used\
double tolerate_imb = IMB_TOLERANCE * tmp_max_avg_ratio;\
^\
\
../bin/charmc -optimize -production -I. -c -o lbdb.o lbdb.C\
../bin/charmc -optimize -production -I. -c -o lbdbf.o lbdbf.C\
../bin/charmc -optimize -production -I. -c -o ckobjQ.o ckobjQ.C\
../bin/charmc -optimize -production -I. -c -o LBAgent.o LBAgent.C\
../bin/charmc -optimize -production -I. -c -o LBProfit.o LBProfit.C\
../bin/charmc -optimize -production -I. -c -o ckcheckpoint.o ckcheckpoint.C\
"ckcheckpoint.C", line 587: warning: variable "filename" was declared but\
never referenced\
char filename[1024];\
^\
\
"ckcheckpoint.C", line 680: warning: variable "filename" was declared but\
never referenced\
char filename[1024];\
^\
\
"CkCheckpointStatus.def.h", line 22: warning: variable "newmsg" was declared\
but never referenced\
CkCheckpointStatusMsg *newmsg = (CkCheckpointStatusMsg *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o ckmemcheckpoint.o ckmemcheckpoint.C\
"ckmemcheckpoint.C", line 584: warning: variable "budPEs" was declared but\
never referenced\
int budPEs[2];\
^\
\
"ckmemcheckpoint.C", line 959: warning: variable "idx" was declared but never\
referenced\
int idx;\
^\
\
"CkMemCheckpoint.def.h", line 514: warning: variable "newmsg" was declared but\
never referenced\
CkArrayCheckPTReqMessage *newmsg = (CkArrayCheckPTReqMessage *)this;\
^\
\
"ckmemcheckpoint.C", line 60: warning: variable "replicaDieHandlerIdx" was\
declared but never referenced\
static int replicaDieHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 61: warning: variable "replicaDieBcastHandlerIdx"\
was declared but never referenced\
static int replicaDieBcastHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 62: warning: variable "changePhaseHandlerIdx" was\
declared but never referenced\
static int changePhaseHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 67: warning: variable "pingHandlerIdx" was declared\
but never referenced\
static int pingHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 68: warning: variable "pingCheckHandlerIdx" was\
declared but never referenced\
static int pingCheckHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 69: warning: variable "buddyDieHandlerIdx" was\
declared but never referenced\
static int buddyDieHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 70: warning: variable "lastPingTime" was set but\
never used\
static double lastPingTime = -1;\
^\
\
"ckmemcheckpoint.C", line 1262: warning: function "CkRestartCheckPointCallback"\
was declared but never referenced\
static void CkRestartCheckPointCallback(void *ignore, void *msg)\
^\
\
"ckmemcheckpoint.C", line 1269: warning: variable "askPhaseHandlerIdx" was\
declared but never referenced\
static int askPhaseHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1270: warning: variable "recvPhaseHandlerIdx" was\
declared but never referenced\
static int recvPhaseHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1272: warning: variable "restartBcastHandlerIdx" was\
declared but never referenced\
static int restartBcastHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1273: warning: variable "recoverProcDataHandlerIdx"\
was declared but never referenced\
static int recoverProcDataHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1274: warning: variable "restartBeginHandlerIdx" was\
declared but never referenced\
static int restartBeginHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1275: warning: variable "notifyHandlerIdx" was\
declared but never referenced\
static int notifyHandlerIdx;\
^\
\
"ckmemcheckpoint.C", line 1280: warning: function "restartBeginHandler" was\
declared but never referenced\
static void restartBeginHandler(char *msg)\
^\
\
"ckmemcheckpoint.C", line 1309: warning: function "doNothingMsg" was declared\
but never referenced\
static void * doNothingMsg(int * size, void * data, void ** remote, int count)\{\
^\
\
"ckmemcheckpoint.C", line 1328: warning: function "restartBcastHandler" was\
declared but never referenced\
static void restartBcastHandler(char *msg)\
^\
\
"ckmemcheckpoint.C", line 1361: warning: function "recoverProcDataHandler" was\
declared but never referenced\
static void recoverProcDataHandler(char *msg)\
^\
\
"ckmemcheckpoint.C", line 1393: warning: function "askProcDataHandler" was\
declared but never referenced\
static void askProcDataHandler(char *msg)\
^\
\
"ckmemcheckpoint.C", line 1430: warning: function "reportChkpSeqHandler" was\
declared but never referenced\
static void reportChkpSeqHandler(char * m)\
^\
\
"ckmemcheckpoint.C", line 1445: warning: function "getChkpSeqHandler" was\
declared but never referenced\
static void getChkpSeqHandler(char * m)\
^\
\
"ckmemcheckpoint.C", line 1470: warning: function "changePhaseHandler" was\
declared but never referenced\
static void changePhaseHandler(char *msg)\{\
^\
\
"ckmemcheckpoint.C", line 1567: warning: variable "arg_where" was declared but\
never referenced\
static int arg_where = CkCheckPoint_inMEM;\
^\
\
"ckmemcheckpoint.C", line 1597: warning: function "notifyHandler" was declared\
but never referenced\
static void notifyHandler(char *msg)\
^\
\
"ckmemcheckpoint.C", line 1645: warning: function "replicaDieHandler" was\
declared but never referenced\
static void replicaDieHandler(char * msg)\{\
^\
\
"ckmemcheckpoint.C", line 1655: warning: function "replicaDieBcastHandler" was\
declared but never referenced\
static void replicaDieBcastHandler(char *msg)\{\
^\
\
../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C\
"ckevacuation.C", line 53: warning: variable "mgr" was declared but never\
referenced\
CKLOCMGR_LOOP(((CkLocMgr*)(obj))->iterate(inform););\
^\
\
"ckevacuation.C", line 141: warning: variable "mgr" was declared but never\
referenced\
CKLOCMGR_LOOP(((CkLocMgr*)(obj))->iterate(evac););\
^\
\
"ckevacuation.C", line 198: warning: variable "mgr" was declared but never\
referenced\
CKLOCMGR_LOOP(((CkLocMgr*)(obj))->iterate(evac););\
^\
\
../bin/charmc -optimize -production -I. -c -o ckmessagelogging.o ckmessagelogging.C\
"ckmessagelogging.h", line 91: warning: statement is unreachable\
old = data;\
^\
\
../bin/charmc -optimize -production -I. -c -o ckcausalmlog.o ckcausalmlog.C\
../bin/charmc -optimize -production -I. -c -o ckobjid.o ckobjid.C\
"ckobjid.C", line 46: warning: missing return statement at end of non-void\
function "CkObjID::getObject"\
\}\
^\
\
"ckobjid.C", line 68: warning: missing return statement at end of non-void\
function "CkObjID::guessPE"\
\};\
^\
\
../bin/charmc -optimize -production -I. -c -o LBDBManager.o LBDBManager.C\
../bin/charmc -optimize -production -I. -c -o LBComm.o LBComm.C\
../bin/charmc -optimize -production -I. -c -o LBObj.o LBObj.C\
../bin/charmc -optimize -production -I. -c -o LBMachineUtil.o LBMachineUtil.C\
../bin/charmc -optimize -production -I. -c -o CentralPredictor.o CentralPredictor.C\
../bin/charmc -optimize -production -I. -c -o BaseLB.o BaseLB.C\
"BaseLB.C", line 299: warning: variable "pe" was declared but never referenced\
int pe;\
^\
\
../bin/charmc -optimize -production -I. -c -o CentralLB.o CentralLB.C\
"CentralLB.C", line 459: warning: variable "h" is used before its value is set\
Migrated(h, waitForBarrier);\
^\
\
"CentralLB.C", line 897: warning: function "isMigratable" was declared but\
never referenced\
static int isMigratable(LDObjData **objData, int *len, int count, const LDCommData &commData)\
^\
\
../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C\
../bin/charmc -optimize -production -I. -c -o HybridBaseLB.o HybridBaseLB.C\
"HybridBaseLB.C", line 589: warning: variable "found" was set but never used\
int found = 0;\
^\
\
"HybridBaseLB.def.h", line 476: warning: variable "newmsg" was declared but\
never referenced\
DummyMsg *newmsg = (DummyMsg *)this;\
^\
\
../bin/charmc -optimize -production -I. -c -o NborBaseLB.o NborBaseLB.C\
../bin/charmc -optimize -production -I. -c -o DistBaseLB.o DistBaseLB.C\
../bin/charmc -optimize -production -I. -c -o ckgraphTemp.o ckgraphTemp.C\
../bin/charmc -optimize -production -I. -c -o ckgraph.o ckgraph.C\
../bin/charmc -optimize -production -I. -c -o LButil.o LButil.C\
../bin/charmc -optimize -production -I. -c -o RefinerTemp.o RefinerTemp.C\
"RefinerTemp.C", line 91: warning: variable "oldPe" was declared but never\
referenced\
int oldPe=c->oldProcessor;\
^\
\
"RefinerTemp.C", line 301: warning: variable "avg" was declared but never\
referenced\
double avg = averageLoad;\
^\
\
../bin/charmc -optimize -production -I. -c -o Refiner.o Refiner.C\
../bin/charmc -optimize -production -I. -c -o RefinerApprox.o RefinerApprox.C\
"RefinerApprox.h", line 24: warning: function "Refiner::refine()" is hidden by\
"RefinerApprox::refine" -- virtual function override intended?\
virtual int refine(double opt);\
^\
\
../bin/charmc -optimize -production -I. -c -o RefinerComm.o RefinerComm.C\
../bin/charmc -optimize -production -I. -c -o bitvecset.o bitvecset.c\
../bin/charmc -optimize -production -I. -c -o ckset.o ckset.C\
../bin/charmc -optimize -production -I. -c -o ckheap.o ckheap.C\
../bin/charmc -optimize -production -I. -c -o CommLBHeap.o CommLBHeap.C\
../bin/charmc -optimize -production -I. -c -o NullLB.o NullLB.C\
../bin/charmc -optimize -production -I. -c -o LBSimulation.o LBSimulation.C\
../bin/charmc -optimize -production -I. -c -o modifyScheduler.o modifyScheduler.C\
"modifyScheduler.C", line 95: warning: missing return statement at end of\
non-void function "checkAndRemoveMatching"\
\}\
^\
\
../bin/charmc -optimize -production -I. -c -o charmProjections.o charmProjections.C\
../bin/charmc -optimize -production -I. -c -o cktiming.o cktiming.C\
"cktiming.C", line 49: warning: variable "Cpv_insideTraceBracket_" was set but\
never used\
CkpvStaticDeclare(bool, insideTraceBracket);\
^\
\
../bin/charmc -optimize -production -I. -c -o ckbitvector.o ckbitvector.C\
../bin/charmc -optimize -production -I. -c -o pathHistory.o pathHistory.C\
../bin/charmc -optimize -production -I. -c -o controlPoints.o controlPoints.C\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::creation" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::beginExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::endExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
../bin/charmc -optimize -production -I. -c -o arrayRedistributor.o arrayRedistributor.C\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::creation" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::beginExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::endExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
../bin/charmc -optimize -production -I. -c -o cp_effects.o cp_effects.C\
../bin/charmc -optimize -production -I. -c -o trace-controlPoints.o trace-controlPoints.C\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::creation" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::beginExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
"trace-controlPoints.h", line 25: warning: overloaded virtual function\
"Trace::endExecute" is only partially overridden in class\
"TraceControlPoints"\
class TraceControlPoints : public Trace \{\
^\
\
../bin/charmc -optimize -production -I. -c -o mpi-interoperate.o mpi-interoperate.C\
../bin/charmc -optimize -production -o ../lib/libck.a trace-common.o tracec.o tracef.o init.o register.o qd.o ck.o msgalloc.o ckfutures.o ckIgetControl.o debug-message.o debug-charm.o ckcallback.o cklocation.o ckarray.o ckreduction.o ckarrayreductionmgr.o tempo.o waitqd.o LBDatabase.o MetaBalancer.o lbdb.o lbdbf.o ckobjQ.o LBAgent.o LBProfit.o ckcheckpoint.o ckmemcheckpoint.o ckevacuation.o ckmessagelogging.o ckcausalmlog.o ckobjid.o LBDBManager.o LBComm.o LBObj.o LBMachineUtil.o CentralPredictor.o BaseLB.o CentralLB.o HybridBaseLB.o NborBaseLB.o DistBaseLB.o ckgraphTemp.o ckgraph.o LButil.o RefinerTemp.o Refiner.o RefinerApprox.o RefinerComm.o bitvecset.o ckset.o ckheap.o CommLBHeap.o NullLB.o LBSimulation.o modifyScheduler.o charmProjections.o cktiming.o ckbitvector.o pathHistory.o controlPoints.o arrayRedistributor.o cp_effects.o trace-controlPoints.o mpi-interoperate.o\
ar: creating ../lib/libck.a\
../bin/charmc -optimize -production -I. -c -o convcore.o convcore.c\
../bin/charmc -optimize -production -I. -c -o conv-conds.o conv-conds.c\
../bin/charmc -optimize -production -I. -c -o queueing.o queueing.C\
"queueing.C", line 246: warning: variable "parent" was declared but never\
referenced\
_prioqelt *heap, pe, next, parent;\
^\
\
"queueing.C", line 248: warning: variable "mem_cmp_res" was declared but never\
referenced\
int mem_cmp_res;\
^\
\
"queueing.C", line 249: warning: variable "pri_bits_cmp" was declared but\
never referenced\
unsigned int pri_bits_cmp;\
^\
\
"queueing.C", line 250: warning: variable "cnt_nilesh" was declared but never\
referenced\
static int cnt_nilesh=0;\
^\
\
"queueing.C", line 361: warning: variable "left_child" was declared but never\
referenced\
int left_child;\
^\
\
"queueing.C", line 362: warning: variable "temp1_ht_right" was declared but\
never referenced\
_prioqelt temp1_ht_right, temp1_ht_left, temp1_ht_parent;\
^\
\
"queueing.C", line 362: warning: variable "temp1_ht_left" was declared but\
never referenced\
_prioqelt temp1_ht_right, temp1_ht_left, temp1_ht_parent;\
^\
\
"queueing.C", line 362: warning: variable "temp1_ht_parent" was declared but\
never referenced\
_prioqelt temp1_ht_right, temp1_ht_left, temp1_ht_parent;\
^\
\
"queueing.C", line 363: warning: variable "temp1_ht_handle" was declared but\
never referenced\
_prioqelt *temp1_ht_handle;\
^\
\
"queueing.C", line 364: warning: variable "cnt_nilesh1" was declared but never\
referenced\
static int cnt_nilesh1=0;\
^\
\
"queueing.C", line 924: warning: variable "result" was declared but never\
referenced\
void **result;\
^\
\
../bin/charmc -optimize -production -I. -c -o msgmgr.o msgmgr.c\
../bin/charmc -optimize -production -I. -c -o cpm.o cpm.c\
../bin/charmc -optimize -production -I. -c -o cpthreads.o cpthreads.c\
../bin/charmc -optimize -production -I. -c -o futures.o futures.c\
../bin/charmc -optimize -production -I. -c -o cldb.o cldb.c\
PGC/x86-64 Linux 13.7-0: compilation completed with warnings\
../bin/charmc -optimize -production -I. -c -o random.o random.c\
../bin/charmc -optimize -production -I. -c -o debug-conv.o debug-conv.c\
../bin/charmc -optimize -production -I. -c -o debug-conv++.o debug-conv++.C\
../bin/charmc -optimize -production -I. -c -o conv-ccs.o conv-ccs.c\
../bin/charmc -optimize -production -I. -c -o ccs-builtins.o ccs-builtins.C\
../bin/charmc -optimize -production -I. -c -o middle-ccs.o middle-ccs.C\
../bin/charmc -optimize -production -I. -c -o traceCore.o traceCore.C\
../bin/charmc -optimize -production -I. -c -o traceCoreCommon.o traceCoreCommon.C\
../bin/charmc -optimize -production -I. -c -o converseProjections.o converseProjections.C\
../bin/charmc -optimize -production -I. -c -o machineProjections.o machineProjections.C\
../bin/charmc -optimize -production -I. -c -o quiescence.o quiescence.c\
../bin/charmc -optimize -production -I. -c -o isomalloc.o isomalloc.c\
../bin/charmc -optimize -production -I. -c -o mem-arena.o mem-arena.c\
../bin/charmc -optimize -production -I. -c -o conv-counter.o conv-counter.c\
../bin/charmc -optimize -production -I. -c -o global-nop.o global-nop.c\
../bin/charmc -optimize -production -I. -c -o cmipool.o cmipool.c\
../bin/charmc -optimize -production -I. -c -o cpuaffinity.o cpuaffinity.c\
../bin/charmc -optimize -production -I. -c -o cputopology.o cputopology.C\
"cputopology.C", line 272: warning: variable "tmpm" was set but never used\
hostnameMsg *tmpm;\
^\
\
../bin/charmc -optimize -production -I. -c -o cmitls.o cmitls.c\
../bin/charmc -optimize -production -I. -c -o memoryaffinity.o memoryaffinity.c\
SRCBASE=../../src ./commitid.sh\
Copying VERSION.new = v6.7.0-rc2-3-g7ba3a4c-namd-charm-6.7.0-build-2015-Dec-16-167340 over VERSION =\
echo "const char * const CmiCommitID = \\"`cat VERSION`\\";" > commitid.c\
../bin/charmc -optimize -production -I. -c -o commitid.o commitid.c\
../bin/charmc -optimize -production -I. -c -o sdag.o sdag.C\
../bin/charmc -optimize -production -I. -c -o conv-interoperate.o conv-interoperate.c\
../bin/charmc -optimize -production -o ../lib/libconv-core.a convcore.o conv-conds.o queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o random.o debug-conv.o debug-conv++.o conv-ccs.o ccs-builtins.o middle-ccs.o traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o quiescence.o isomalloc.o mem-arena.o conv-counter.o global-nop.o cmipool.o cpuaffinity.o cputopology.o cmitls.o memoryaffinity.o commitid.o sdag.o conv-interoperate.o \
ar: creating ../lib/libconv-core.a\
../bin/charmc -optimize -production -I. -o machine.o -DFOR_CPLUS=1 machine.c\
../bin/charmc -optimize -production -o ../lib/libconv-cplus-y.a machine.o\
ar: creating ../lib/libconv-cplus-y.a\
../bin/charmc -optimize -production -I. -o ../lib/libconv-cplus-n.a -DFOR_CPLUS=0 machine.c\
ar: creating ../lib/libconv-cplus-n.a\
../bin/charmc -optimize -production -I. -c -o pup_util.o pup_util.C\
../bin/charmc -optimize -production -I. -c -o pup_toNetwork.o pup_toNetwork.C\
../bin/charmc -optimize -production -I. -c -o pup_toNetwork4.o pup_toNetwork4.C\
../bin/charmc -optimize -production -I. -c -o pup_xlater.o pup_xlater.C\
../bin/charmc -optimize -production -I. -c -o pup_c.o pup_c.C\
../bin/charmc -optimize -production -I. -c -o pup_paged.o pup_paged.C\
../bin/charmc -optimize -production -I. -c -o pup_cmialloc.o pup_cmialloc.C\
../bin/charmc -optimize -production -I. -c -o ckimage.o ckimage.C\
../bin/charmc -optimize -production -I. -c -o ckdll.o ckdll.C\
"ckdll.C", line 18: warning: function "deleteFile" was declared but never\
referenced\
static void deleteFile(const char *fileName) \{\
^\
\
../bin/charmc -optimize -production -I. -c -o ckhashtable.o ckhashtable.C\
../bin/charmc -optimize -production -I. -c -o sockRoutines.o sockRoutines.c\
../bin/charmc -optimize -production -I. -c -o conv-lists.o conv-lists.C\
../bin/charmc -optimize -production -I. -c -o RTH.o RTH.C\
"RTH.C", line 175: warning: expression has no effect\
oldFrame.pc==PC_START; /* pretend we've never suspended */\
^\
\
../bin/charmc -optimize -production -I. -c -o persist-comm.o persist-comm.c\
../bin/charmc -optimize -production -I. -c -o mempool.o mempool.c\
../bin/charmc -optimize -production -I. -c -o graph.o graph.c\
../bin/charmc -optimize -production -I. -c -o TopoManager.o TopoManager.C\
../bin/charmc -optimize -production -I. -c -o CrayNid.o CrayNid.c\
../bin/charmc -optimize -production -I. -c -o BGQTorus.o BGQTorus.C\
../bin/charmc -optimize -production -I. -c -o crc32.o crc32.c\
../bin/charmc -optimize -production -I. -c -o lz4.o lz4.c\
../bin/charmc -optimize -production -I. -c -o partitioning_strategies.o partitioning_strategies.C\
"partitioning_strategies.C", line 390: warning: variable "nodes" was declared\
but never referenced\
int *nodes = node_begin;\
^\
\
"partitioning_strategies.C", line 391: warning: variable "nnodes" was declared\
but never referenced\
int nnodes = node_end - node_begin;\
^\
\
"partitioning_strategies.C", line 344: warning: function\
"<unnamed>::TopoManagerWrapper::coord" was declared but never\
referenced\
int coord(int node, int dim) \{\
^\
\
../bin/charmc -optimize -production -I. -c -o hilbert.o hilbert.C\
../bin/charmc -optimize -production -o ../lib/libconv-util.a pup_util.o pup_toNetwork.o pup_toNetwork4.o pup_xlater.o pup_c.o pup_paged.o pup_cmialloc.o ckimage.o ckdll.o ckhashtable.o sockRoutines.o conv-lists.o RTH.o persist-comm.o mempool.o graph.o TopoManager.o CrayNid.o BGQTorus.o crc32.o lz4.o partitioning_strategies.o hilbert.o\
ar: creating ../lib/libconv-util.a\
../bin/charmc -optimize -production -c pup_f.f90 && ../bin/charmc -optimize -production -cpmod ../include pupmod.M || touch pup_f.o\
pup_f.f90:175.94:\
\
edure apya1d_al,apya2d_al,apya3d_al,apya4d_al,apya5d_al,apya6d_al,apya7d_al\
1 \
Error: Ambiguous interfaces 'apya7d_al' and 'apya7d' in generic interface 'apup' at (1)\
Fatal Error by charmc in directory /ghome/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp\
Command /usr/bin/gfortran -fPIC -fno-second-underscore -fdollar-ok -I ../bin/../include -I../bin/../include -O2 -c pup_f.f90 -o pup_f.o returned error code 1\
charmc exiting...\
../bin/charmc -optimize -production -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a\
Fatal Error by charmc in directory /ghome/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp\
pup_f.o: file not recognized: File truncated\
charmc exiting...\
../bin/charmc -optimize -production -o ../lib/libldb-rand.a cldb.rand.c\
ar: creating ../lib/libldb-rand.a\
../bin/charmc -optimize -production -o ../lib/libldb-spray.a cldb.spray.c\
ar: creating ../lib/libldb-spray.a\
../bin/charmc -optimize -production -o ../lib/libldb-workstealing.a cldb.workstealing.c\
ar: creating ../lib/libldb-workstealing.a\
../bin/charmc -optimize -production -o ../lib/libldb-neighbor.a cldb.neighbor.c\
ar: creating ../lib/libldb-neighbor.a\
../bin/charmc -optimize -production -o ../lib/libldb-none.a cldb.none.c\
ar: creating ../lib/libldb-none.a\
../bin/charmc -optimize -production -o ../lib/libldb-test.a cldb.test.c\
ar: creating ../lib/libldb-test.a\
../bin/charmc -optimize -production -o ../lib/libldb-bluegene.a cldb.bluegene.c\
ar: creating ../lib/libldb-bluegene.a\
../bin/charmc -optimize -production -I. -c -o trace-converse.o trace-converse.c\
../bin/charmc -optimize -production -o ../lib/libtrace-converse.a trace-converse.o\
ar: creating ../lib/libtrace-converse.a\
../bin/charmc -optimize -production -o tracef_f.o -c tracef_f.f90 && ../bin/charmc -optimize -production -cpmod ../include tracemod.M || touch tracef_f.o\
Appending .mod to object file name\
../bin/charmc -optimize -production -o ../lib/libtracef_f.a tracef_f.o || touch ../lib/libtracef_f.a\
ar: creating ../lib/libtracef_f.a\
cp memory.c libmemory-default.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-default.a -DCMK_MEMORY_BUILD_DEFAULT libmemory-default.c\
ar: creating ../lib/libmemory-default.a\
cp memory.c libmemory-os.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os.a -DCMK_MEMORY_BUILD_OS libmemory-os.c\
ar: creating ../lib/libmemory-os.a\
cp memory.c libmemory-gnu.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-gnu.a -DCMK_MEMORY_BUILD_GNU -touch-on-failure libmemory-gnu.c\
PGC-S-0103-Illegal operand types for comparison operator (./memory-gnu-internal.c: 3981)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libmemory-gnu.a\
cp memory.c libmemory-verbose.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-verbose.a -DCMK_MEMORY_BUILD_VERBOSE -touch-on-failure libmemory-verbose.c\
PGC-S-0103-Illegal operand types for comparison operator (./memory-gnu-internal.c: 3981)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libmemory-verbose.a\
cp memory.c libmemory-paranoid.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-paranoid.a -DCMK_MEMORY_BUILD_PARANOID -touch-on-failure libmemory-paranoid.c\
PGC-S-0103-Illegal operand types for comparison operator (./memory-gnu-internal.c: 3981)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libmemory-paranoid.a\
cp memory.c libmemory-leak.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-leak.a -DCMK_MEMORY_BUILD_LEAK -touch-on-failure libmemory-leak.c\
PGC-S-0103-Illegal operand types for comparison operator (./memory-gnu-internal.c: 3981)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libmemory-leak.a\
cp memory.c libmemory-isomalloc.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-isomalloc.a -DCMK_MEMORY_BUILD_ISOMALLOC -touch-on-failure libmemory-isomalloc.c\
PGC-S-0103-Illegal operand types for comparison operator (./memory-gnu-internal.c: 3981)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libmemory-isomalloc.a\
cp memory.c libmemory-os-verbose.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-verbose.a -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE -touch-on-failure libmemory-os-verbose.c\
ar: creating ../lib/libmemory-os-verbose.a\
cp memory.c libmemory-os-isomalloc.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-isomalloc.a -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC -touch-on-failure libmemory-os-isomalloc.c\
ar: creating ../lib/libmemory-os-isomalloc.a\
cp memory.c libmemory-os-leak.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-leak.a -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK -touch-on-failure libmemory-os-leak.c\
ar: creating ../lib/libmemory-os-leak.a\
cp memory.c libmemory-os-paranoid.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-paranoid.a -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID -touch-on-failure libmemory-os-paranoid.c\
ar: creating ../lib/libmemory-os-paranoid.a\
cp memory.c libmemory-os-lock.c\
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-lock.a -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK -touch-on-failure libmemory-os-lock.c\
PGC/x86-64 Linux 13.7-0: compilation completed with warnings\
ar: creating ../lib/libmemory-os-lock.a\
../bin/charmc -optimize -production -o ../lib/libmemory-os-wrapper.a memory-os-wrapper.C || touch ../lib/libmemory-os-wrapper.a\
"memory-os-wrapper.C", line 14: error: identifier "RTLD_NEXT" is undefined\
mm_malloc = (void *(*)(size_t)) dlsym(RTLD_NEXT, "malloc");\
^\
\
1 error detected in the compilation of "memory-os-wrapper.C".\
Fatal Error by charmc in directory /ghome/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp\
Command mpicxx -DCMK_GFORTRAN -I../bin/../include -D__CHARMC__=1 -O2 -U_FORTIFY_SOURCE -c memory-os-wrapper.C -o memory-os-wrapper.o returned error code 2\
charmc exiting...\
cp threads.c libthreads-default.c\
( /usr/bin/gmake -C QuickThreads clean )\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/QuickThreads'\
rm -f qtmd.h libqt.a libstp.a meas.o stp.o qt.o\
rm -f qtmdb.s qtmds.s qtmdc.o qtmdb.o qtmds.o run\
rm -f Makefile\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/QuickThreads'\
( cd QuickThreads;./configure )\
Running configure on generic64-light\
( /usr/bin/gmake -C QuickThreads qt OPTS='-optimize -production -Wno-error' ) || ( echo "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" && false )\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/QuickThreads'\
rm -f qtmd.h\
../system_ln md/setjmp_d.h qtmd.h\
../../bin/charmc -seq -I. -optimize -production -Wno-error -U_FORTIFY_SOURCE -c -o qt.o qt.c\
../../bin/charmc -seq -I. -optimize -production -Wno-error -U_FORTIFY_SOURCE -c -o qtmds.o md/setjmp64_.c\
PGC/x86-64 Linux 13.7-0: compilation completed with warnings\
CHARMINC=..; . ../conv-config.sh; \\\
../../bin/charmc -seq -I. -shared -optimize -production -Wno-error -o libqt.$CMK_SHARED_SUF qt.o qtmds.o\
Warning: building shared library is skipped, possibly due to not supported, check configuration files.\
../../bin/charmc -seq -I. -optimize -production -Wno-error -U_FORTIFY_SOURCE -o libqt.a qt.o qtmds.o \
ar: creating libqt.a\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/QuickThreads'\
cp -f QuickThreads/libqt.a ../lib/libckqt.a\
(CHARMINC=.; . ./conv-config.sh; \\\
test -d ../lib_so && \\\
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \\\
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so/libckqt.$CMK_SHARED_SUF)\
cp: cannot stat `QuickThreads/libqt.so': No such file or directory\
gmake: [QUICK_THREADS] Error 1 (ignored)\
touch QUICK_THREADS\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-default.a -DCMK_THREADS_BUILD_DEFAULT=1 libthreads-default.c\
ar: creating ../lib/libthreads-default.a\
cp threads.c libthreads-default-tls.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-default-tls.a -DCMK_THREADS_BUILD_DEFAULT -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-default-tls.c\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-default-tls.c: 647)\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-default-tls.c: 647)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libthreads-default-tls.a\
cp threads.c libthreads-qt.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-qt.a -DCMK_THREADS_BUILD_QT=1 libthreads-qt.c\
ar: creating ../lib/libthreads-qt.a\
cp threads.c libthreads-qt-tls.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-qt-tls.a -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-qt-tls.c\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-qt-tls.c: 647)\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-qt-tls.c: 647)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libthreads-qt-tls.a\
cp threads.c libthreads-context.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-context.a -DCMK_THREADS_BUILD_CONTEXT=1 -touch-on-failure libthreads-context.c\
ar: creating ../lib/libthreads-context.a\
cp threads.c libthreads-context-tls.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-context-tls.a -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-context-tls.c\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-context-tls.c: 647)\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-context-tls.c: 647)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libthreads-context-tls.a\
cp threads.c libthreads-uJcontext.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-uJcontext.a -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext.c\
ar: creating ../lib/libthreads-uJcontext.a\
cp threads.c libthreads-uJcontext-tls.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-uJcontext-tls.a -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext-tls.c\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-uJcontext-tls.c: 647)\
PGC-S-0059-Struct or union required on left of . or -> (libthreads-uJcontext-tls.c: 647)\
PGC/x86-64 Linux 13.7-0: compilation completed with severe errors\
ar: creating ../lib/libthreads-uJcontext-tls.a\
cp threads.c libthreads-pthreads.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-pthreads.a -DCMK_THREADS_BUILD_PTHREADS=1 -touch-on-failure libthreads-pthreads.c\
ar: creating ../lib/libthreads-pthreads.a\
cp threads.c libthreads-fibers.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-fibers.a -DCMK_THREADS_BUILD_FIBERS=1 -touch-on-failure libthreads-fibers.c\
PGC-F-0206-Can't find include file windows.h (libthreads-fibers.c: 1106)\
PGC/x86-64 Linux 13.7-0: compilation aborted\
ar: creating ../lib/libthreads-fibers.a\
cp threads.c libthreads-stackcopy.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-stackcopy.a -DCMK_THREADS_BUILD_STACKCOPY=1 -touch-on-failure libthreads-stackcopy.c\
ar: creating ../lib/libthreads-stackcopy.a\
cp threads.c libthreads-memoryalias.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-memoryalias.a -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-memoryalias.c\
ar: creating ../lib/libthreads-memoryalias.a\
cp threads.c libthreads-qt-memoryalias.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-qt-memoryalias.a -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-qt-memoryalias.c\
ar: creating ../lib/libthreads-qt-memoryalias.a\
cp threads.c libthreads-context-memoryalias.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-context-memoryalias.a -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-context-memoryalias.c\
ar: creating ../lib/libthreads-context-memoryalias.a\
cp threads.c libthreads-uJcontext-memoryalias.c\
../bin/charmc -optimize -production -IQuickThreads -I. -o ../lib/libthreads-uJcontext-memoryalias.a -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_ALIAS_STACK=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext-memoryalias.c\
ar: creating ../lib/libthreads-uJcontext-memoryalias.a\
../bin/charmc -optimize -production -DCMK_NOT_USE_CONVERSE=1 ccs-client.c\
../bin/charmc -optimize -production -o ../lib/libccs-client.a ccs-client.o\
ar: creating ../lib/libccs-client.a\
../bin/charmc -optimize -production -I. -c -o custom_partitioner.o custom_partitioner.C\
../bin/charmc -optimize -production -I. -c -o set_partition_params.o set_partition_params.c\
../bin/charmc -optimize -production -o ../lib/libconv-partition.a custom_partitioner.o set_partition_params.o\
ar: creating ../lib/libconv-partition.a\
../bin/charmc -optimize -production -I. -c -o topology.o topology.C\
../bin/charmc -optimize -production -I. -c -o generate.o generate.c\
../bin/charmc -optimize -production -I. -c -o edgelist.o edgelist.c\
../bin/charmc -optimize -production -o ../lib/libconv-ldb.a topology.o generate.o edgelist.o\
ar: creating ../lib/libconv-ldb.a\
if [ -f charmrun ] ; then ( cp -f charmrun ../bin ) ; fi\
../bin/charmc -optimize -production -c global-elfgot.C -o ../lib/libglobal-swap.a || touch ../lib/libglobal-swap.a\
ar: creating ../lib/libglobal-swap.a\
../bin/charmc -optimize -production -c global-elfcopy.C -o ../lib/libglobal-copy.a || touch ../lib/libglobal-copy.a\
ar: creating ../lib/libglobal-copy.a\
../bin/charmc -optimize -production -c loadsym.c -o ../lib/loadsym.a || touch ../lib/loadsym.a\
ar: creating ../lib/loadsym.a\
../bin/charmc -host conv-cpm.c\
../bin/charmc -host -language c -o conv-cpm -cp ../bin/ conv-cpm.o\
../bin/charmc -optimize -production -c -I. charmf.C\
../bin/charmc -optimize -production -c charmmod.f90 || touch charmmod.o\
../bin/charmc -optimize -production -cpmod ../include charm.M\
Appending .mod to object file name\
../bin/charmc -optimize -production -o ../lib/libckf.a charmf.o charmmod.o || touch ../lib/libckf.a\
ar: creating ../lib/libckf.a\
../bin/charmc -optimize -production -I. -c -o main.o main.C\
../bin/charmc -optimize -production -o ../lib/libckmain.a main.o\
ar: creating ../lib/libckmain.a\
/usr/bin/gmake -C libs/ck-libs/NDMeshStreamer\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/NDMeshStreamer'\
../../../../bin/charmc -optimize -production -c NDMeshStreamer.ci\
../../../../bin/charmc -optimize -production -I../../../../tmp -o NDMeshStreamer.o NDMeshStreamer.C\
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleNDMeshStreamer.a NDMeshStreamer.o\
ar: creating ../../../../lib/libmoduleNDMeshStreamer.a\
/bin/cp libmoduleNDMeshStreamer.dep ../../../../lib\
/bin/cp NDMeshStreamer.decl.h ../../../../include\
/bin/cp NDMeshStreamer.def.h ../../../../include\
/bin/cp NDMeshStreamer.h ../../../../include\
/bin/cp VirtualRouter.h ../../../../include\
/bin/cp DataItemTypes.h ../../../../include\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/NDMeshStreamer'\
/usr/bin/gmake -C libs/ck-libs/multicast\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/multicast'\
../../../../bin/charmc -optimize -production -c ckmulticast.ci\
../../../../bin/charmc -optimize -production -I../../../../tmp -o ckmulticast.o ckmulticast.C\
"ckmulticast.C", line 871: warning: variable "sectionInfo" was declared but\
never referenced\
CkSectionInfo §ionInfo = msg->_cookie;\
^\
\
"CkMulticast.def.h", line 294: warning: variable "newmsg" was declared but\
never referenced\
cookieMsg *newmsg = (cookieMsg *)this;\
^\
\
"CkMulticast.def.h", line 391: warning: variable "newmsg" was declared but\
never referenced\
multicastGrpMsg *newmsg = (multicastGrpMsg *)this;\
^\
\
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkMulticast.a ckmulticast.o \
ar: creating ../../../../lib/libmoduleCkMulticast.a\
/bin/cp CkMulticast.decl.h ../../../../include\
/bin/cp CkMulticast.def.h ../../../../include\
/bin/cp ckmulticast.h ../../../../include\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/multicast'\
/usr/bin/gmake -C libs/ck-libs/pythonCCS\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'\
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \\\
if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional OPTS='-optimize -production ' || exit 1); fi)\
gmake[2]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'\
../../../../bin/charmc -optimize -production -intrinsic PythonCCS.ci\
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \\\
echo "#include \\"python$CMK_BUILD_PYTHON/Python.h\\"" > pythonIncludes.h; \\\
echo "#include \\"python$CMK_BUILD_PYTHON/compile.h\\"" >> pythonIncludes.h; \\\
echo "#include \\"python$CMK_BUILD_PYTHON/eval.h\\"" >> pythonIncludes.h; \\\
echo "#include \\"python$CMK_BUILD_PYTHON/node.h\\"" >> pythonIncludes.h \\\
) \
../../../../bin/charmc -optimize -production -intrinsic charmdebug-python.ci\
../../../../bin/charmc -optimize -production -c PythonCCS.C\
"/usr/include/python2.6/pyconfig-64.h", line 1034: warning: incompatible\
redefinition of macro "_POSIX_C_SOURCE" (declared at line 213 of\
"/usr/include/features.h")\
#define _POSIX_C_SOURCE 200112L\
^\
\
"/usr/include/python2.6/pyfpe.h", line 8: warning: white space between\
backslash and newline in line splice ignored\
/ Copyright (c) 1996. \\ \
^\
\
../../../../bin/charmc -optimize -production -c PythonCCS-client.C\
../../../../bin/charmc -optimize -production PythonCCS.o PythonCCS-client.o -o ../../../../lib/libmodulePythonCCS.a\
ar: creating ../../../../lib/libmodulePythonCCS.a\
../../../../bin/charmc -optimize -production -c -I. charmdebug-python.C\
"/usr/include/python2.6/pyconfig-64.h", line 1034: warning: incompatible\
redefinition of macro "_POSIX_C_SOURCE" (declared at line 213 of\
"/usr/include/features.h")\
#define _POSIX_C_SOURCE 200112L\
^\
\
"/usr/include/python2.6/pyfpe.h", line 8: warning: white space between\
backslash and newline in line splice ignored\
/ Copyright (c) 1996. \\ \
^\
\
"charmdebug-python.C", line 84: warning: missing return statement at end of\
non-void function "CpdPythonGroup::buildIterator"\
\}\
^\
\
../../../../bin/charmc -optimize -production charmdebug-python.o -o ../../../../lib/libmodulecharmdebug_python.a\
ar: creating ../../../../lib/libmodulecharmdebug_python.a\
cp PythonCCS.h PythonCCS-client.h PythonCCS.decl.h pythonIncludes.h ../../../../include/\
touch headers\
gmake[2]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/pythonCCS'\
/usr/bin/gmake -C libs/ck-libs/io\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/io'\
../../../../bin/charmc -optimize -production -c ckio.ci\
touch ckio.ci.stamp\
cp ckio.h CkIO.decl.h CkIO.def.h CkIO_impl.decl.h CkIO_impl.def.h ../../../../include/\
touch headers\
../../../../bin/charmc -optimize -production -c ckio.C\
"ckio.C", line 343: warning: variable "status" was set but never used\
int status;\
^\
\
"CkIO.def.h", line 33: warning: variable "newmsg" was declared but never\
referenced\
FileReadyMsg *newmsg = (FileReadyMsg *)this;\
^\
\
"CkIO.def.h", line 68: warning: variable "newmsg" was declared but never\
referenced\
SessionReadyMsg *newmsg = (SessionReadyMsg *)this;\
^\
\
"CkIO.def.h", line 103: warning: variable "newmsg" was declared but never\
referenced\
SessionCommitMsg *newmsg = (SessionCommitMsg *)this;\
^\
\
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkIO.a ckio.o \
ar: creating ../../../../lib/libmoduleCkIO.a\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/io'\
/usr/bin/gmake -C libs/ck-libs/ckloop\
gmake[1]: Entering directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop'\
../../../../bin/charmc -optimize -production -lpthread -c CkLoop.ci\
../../../../bin/charmc -optimize -production -lpthread -I../../../../tmp -o CkLoop.o CkLoop.C\
"CkLoop.h", line 105: error: identifier "__sync_add_and_fetch" is undefined\
return __sync_add_and_fetch(&curChunkIdx, 1);\
^\
\
"CkLoop.h", line 119: error: identifier "__sync_add_and_fetch" is undefined\
__sync_add_and_fetch(&finishFlag, counter);\
^\
\
"CkLoop.h", line 264: warning: statement is unreachable\
return NULL;\
^\
\
"CkLoop.C", line 18: error: identifier "__thread" is undefined\
static __thread pthread_cond_t thdCondition; //the signal var of each pthread to be notified\
^\
\
"CkLoop.C", line 18: error: "pthread_cond_t" has already been declared in the\
current scope\
static __thread pthread_cond_t thdCondition; //the signal var of each pthread to be notified\
^\
\
"CkLoop.C", line 18: error: expected a ";"\
static __thread pthread_cond_t thdCondition; //the signal var of each pthread to be notified\
^\
\
"CkLoop.C", line 19: error: identifier "__thread" is undefined\
static __thread pthread_mutex_t thdLock; //the lock associated with the condition variables\
^\
\
"CkLoop.C", line 19: error: "pthread_mutex_t" has already been declared in the\
current scope\
static __thread pthread_mutex_t thdLock; //the lock associated with the condition variables\
^\
\
"CkLoop.C", line 19: error: expected a ";"\
static __thread pthread_mutex_t thdLock; //the lock associated with the condition variables\
^\
\
"CkLoop.C", line 27: error: variable "pthread_mutex_t" is not a type name\
static pthread_mutex_t **allLocks = NULL;\
^\
\
"CkLoop.C", line 28: error: variable "pthread_cond_t" is not a type name\
static pthread_cond_t **allConds = NULL;\
^\
\
"CkLoop.C", line 64: error: identifier "thdLock" is undefined\
pthread_mutex_init(&thdLock, NULL);\
^\
\
"CkLoop.C", line 65: error: identifier "thdCondition" is undefined\
pthread_cond_init(&thdCondition, NULL);\
^\
\
"CkLoop.C", line 70: error: identifier "__sync_add_and_fetch" is undefined\
__sync_add_and_fetch(&gCrtCnt, 1);\
^\
\
"CkLoop.C", line 93: warning: missing return statement at end of non-void\
function "ndhThreadWork"\
\}\
^\
\
"CkLoop.C", line 98: error: expected an expression\
allLocks = (pthread_mutex_t **)malloc(sizeof(void *)*numThreads);\
^\
\
"CkLoop.C", line 98: error: expected a ";"\
allLocks = (pthread_mutex_t **)malloc(sizeof(void *)*numThreads);\
^\
\
"CkLoop.C", line 99: error: expected an expression\
allConds = (pthread_cond_t **)malloc(sizeof(void *)*numThreads);\
^\
\
"CkLoop.C", line 99: error: expected a ";"\
allConds = (pthread_cond_t **)malloc(sizeof(void *)*numThreads);\
^\
\
"CkLoop.C", line 198: warning: variable "_start" was declared but never\
referenced\
double _start; //may be used for tracing\
^\
\
"CkLoop.def.h", line 88: warning: variable "newmsg" was declared but never\
referenced\
CharmNotifyMsg *newmsg = (CharmNotifyMsg *)this;\
^\
\
"CkLoop.def.h", line 123: warning: variable "newmsg" was declared but never\
referenced\
HelperNotifyMsg *newmsg = (HelperNotifyMsg *)this;\
^\
\
"CkLoop.def.h", line 158: warning: variable "newmsg" was declared but never\
referenced\
DestroyNotifyMsg *newmsg = (DestroyNotifyMsg *)this;\
^\
\
"CkLoop.C", line 38: warning: function "HelperOnCore" was declared but never\
referenced\
static int HelperOnCore() \{\
^\
\
"CkLoop.C", line 397: warning: variable "_ckloopEP" was set but never used\
static int _ckloopEP;\
^\
\
17 errors detected in the compilation of "CkLoop.C".\
Fatal Error by charmc in directory /d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop\
Command mpicxx -DCMK_GFORTRAN -I../../../../bin/../include -D__CHARMC__=1 -I../../../../tmp -O2 -U_FORTIFY_SOURCE -c CkLoop.C -o CkLoop.o returned error code 2\
charmc exiting...\
gmake[1]: *** [CkLoop.o] Error 1\
gmake[1]: Leaving directory `/d4/atyagiaa/NAMD_CVS-2015-12-17_Source/charm-6.7.0/mpi-linux-x86_64/tmp/libs/ck-libs/ckloop'\
gmake: *** [ckloop] Error 2\
-------------------------------------------------\
Charm++ NOT BUILT. Either cd into mpi-linux-x86_64/tmp and try\
to resolve the problems yourself, visit\
http://charm.cs.illinois.edu/\
for more information. Otherwise, email the developers at charm AT cs.illinois.edu\
[atyagiaa@login-0 charm-6.7.0]$ ../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C\
-bash: ../bin/charmc: No such file or directory}
- [charm] Charm install Error, Abhishek TYAGI, 12/21/2015
- Re: [charm] Charm install Error, Phil Miller, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Jim Phillips, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Abhishek TYAGI, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Jim Phillips, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Abhishek TYAGI, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Jim Phillips, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Abhishek TYAGI, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Jim Phillips, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Abhishek TYAGI, 12/21/2015
- Re: [charm] [ppl] Charm install Error, Jim Phillips, 12/21/2015
- Re: [charm] Charm install Error, Phil Miller, 12/21/2015
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