Charm++ parallel programming system

[Phil Miller <mille121 AT illinois.edu>]

Ah, I see the error. In the definition of
CMK_NATIVE_CXX/CMK_NATIVE_LDXX, we're *missing* the deployment version
argument. If you add it there, it should be happy.

On Wed, Jun 22, 2016 at 9:42 AM, Steve Petruzza 
<spetruzza AT sci.utah.edu>
 wrote:
> Thank you Phil,
>
> I tried both with the error is still the same here the dump (single core):
> Copying src/scripts/Makefile to mpi-darwin-x86_64/tmp
> Soft-linking over bin
> Soft-linking over lib
> Soft-linking over lib_so
> Soft-linking over include
> Soft-linking over tmp
> Generating mpi-darwin-x86_64/tmp/conv-mach-pre.sh
> Performing '/opt/local/bin/gmake basics OPTS=-optimize -production QUIET=
> CONFIG_OPTS=--disable-controlpoint --disable-tracing
> --disable-tracing-commthread --disable-charmdebug --disable-replay
> --disable-error-checking --disable-stats --enable-tracing' in
> mpi-darwin-x86_64/tmp
> /opt/local/bin/gmake charmxi
> gmake[1]: Entering directory
> '/Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp'
> ./configure --disable-controlpoint --disable-tracing
> --disable-tracing-commthread --disable-charmdebug --disable-replay
> --disable-error-checking --disable-stats --enable-tracing
> Error checking is disabled
> Statistics collection is disabled
> Charm tracing is enabled
> Charm tracing communication thread is disabled
> CharmDebug is disabled
> Charm record/replay is disabled
> CCS is enabled
> Charm control point is disabled
> Charm LB user data is disabled
> Charm shrink expand is disabled
> Setting load balancing timer type as 'double'
> checking machine name... mpi-darwin-x86_64
> checking "cp command as"... cp -p
> checking "C++ compiler as"... "mpicxx -m64 -dynamic -fPIC -fno-common
> -mmacosx-version-min=10.11     "
> checking "whether C++ compiler works"... "ok"
> checking "C++ linker as"... "mpicxx -m64 -dynamic -fPIC -fno-common
> -mmacosx-version-min=10.11     "
> checking "whether linker works"... "ok"
> checking "Native C++ compiler as"... "clang++  -stdlib=libc++ "
> checking "Sequential C++ compiler as"... "mpicxx -m64 -dynamic -fPIC
> -fno-common -mmacosx-version-min=10.11 "
> checking "whether compiler accept -fno-stack-protector"... "ok"
> checking "whether C++ compiler supports C++11 without flags"... "yes"
> checking "whether C++ compiler supports C++11 with '-std=c++0x'"... "yes"
> Setting charm++ envelope refnum field to unsigned short
> Configuring support for message priorities of arbitrary size (bitvectors)
> checking "whether compiler generates code for 64-bit"... "yes"
> checking "whether compiler supports std::alignment_of"... "yes"
> checking "whether has values.h "... "no"
> checking "whether has stdint.h "... "yes"
> checking "whether has malloc.h "... "no"
> checking "whether has alloca.h "... "yes"
> checking "whether has regex.h "... "yes"
> checking "whether long long works"... "yes"
> checking "whether __int64 works"... "no"
> checking "whether __int128 (128-bit integer) works"... "yes"
> checking "whether __int128_t (128-bit integer) works"... "yes"
> checking "whether long double works"... "yes"
> checking "whether ucontext has FPU pointer"... "no"
> checking "whether ucontext has pointer (v_regs) of vector type"... "no"
> checking "whether ibverbs ibv_port_attr has link_layer field"... "no"
> checking "whether inline works in C"... "yes"
> checking "whether C++ signed char and char differ"... "yes"
> checking "whether C++ allows declaration of varsize array"... "yes"
> checking "whether typeinfo/typeid works"... "ok"
> checking "whether std::iterator_traits is defined"... "ok"
> checking "whether std::distance is defined"... "ok"
> checking "whether std::inserter is defined"... "ok"
> checking "whether std::unordered_map is defined"... "ok"
> checking "whether anon structs are permitted"... "yes"
> checking "whether operator delete can be overloaded in same class"... "ok"
> checking "whether offsetof is defined"... "yes"
> checking "whether GCC x86 assembly works"... "yes"
> checking "whether GCC x86 assembly for atomic increment works"... "yes"
> checking "whether GCC IA64 assembly works"... "no"
> checking "whether asm eieio assembly works"... "no"
> checking "whether __thread (Thread Local Storage) is supported"... "yes"
> checking "whether synchronization primitives (__sync_add_and_fetch) works in
> C"... "yes"
> checking "whether synchronization primitives (__sync_synchronize) works in
> C"... "yes"
> checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works
> in C"... "no"
> checking "whether switching TLS register (64-bit) is supported"... "no"
> checking "whether build on MPI"... "yes"
> checking "whether need to specify MPI library"... "no"
> checking "whether MPI_Init_thread is supported"... "yes"
> checking "whether macro conflicts occurs due to C++ MPI bindings"... "no"
> checking "whether getrusage accepts RUSAGE_THREAD"... "no"
> checking "whether has asctime"... "yes"
> checking "whether has log2"... "yes"
> checking "whether has sqrtf"... "yes"
> checking "whether has fabsf"... "yes"
> checking "whether has mkstemp"... "yes"
> checking "whether has system"... "yes"
> checking "whether has sync()"... "yes"
> checking "whether has fsync()"... "yes"
> checking "whether has fdatasync()"... "no"
> checking "whether has sbrk"... "yes"
> checking "whether has _setjmp/_longjmp"... "yes"
> checking "whether has mstats"... "no"
> checking "whether has mallinfo"... "no"
> checking "whether has popen"... "yes"
> checking "whether has poll"... "yes"
> checking "whether has getpagesize"... "yes"
> checking "whether has getpid"... "yes"
> checking "whether has kill"... "yes"
> checking "whether has setpriority"... "yes"
> checking "whether to use signal-safe system() "... "no"
> checking "whether sched_setaffinity call exists"... "no"
> checking "whether pthread_setaffinity_np call exists"... "no"
> checking "whether pthread_spin_lock exists"... "no"
> checking "whether bindprocessor call exists"... "no"
> checking "whether dlopen links without -ldl"... "yes"
> checking "whether dlopen links with -ldl"... "yes"
> checking "whether gethostname call exists"... "yes"
> checking "whether getProcAddress works"... "no"
> checking "whether has socklen_t"... "yes"
> checking "whether getifaddrs call exists"... "yes"
> checking "whether the mmap() syscall exists"... "yes"
> checking "whether mmap() accepts MAP_ANON"... "yes"
> checking "whether mmap() accepts MAP_NORESERVE"... "yes"
> checking "whether has get_myaddress"... "no"
> checking "whether has mprotect"... "yes"
> checking "whether glibc backtrace works"... "yes"
> checking "whether has sleep "... "yes"
> checking "whether has usleep "... "yes"
> checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "no"
> checking "whether has zlib"... "yes"
> checking "whether has elf.h "... "no"
> checking "whether has Multiprocessing.h for Apple "... "no"
> checking "whether ntohl is available"... "yes"
> checking "whether has libjpeg"... "yes"
> checking "whether Python is installed"... "yes"
> checking "whether can build shared library"... "yes"
> checking "whether can build shared library with MPI"... "yes"
> checking for sync... sync
> checking "F77 compiler as"... "g77 "
> checking "whether Fortran 77 compiler works"... "no"
> checking "F90 compiler as"... "f90 "
> checking "whether Fortran 90 compiler works"... "no"
> checking subroutine name used by Fortran 90 compiler... "Fortran compiler
> not working"
> configure: creating ./config.status
> config.status: creating libs/ck-libs/ampi/ampiCC
> config.status: creating conv-autoconfig.h
> config.status: conv-autoconfig.h is unchanged
> config.status: executing config-cleanup commands
> config.status: executing default commands
> ../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c
> -o xi-main.o ../../src/xlat-i/xi-main.C
> clang: error: invalid deployment target for -stdlib=libc++ (requires OS X
> 10.7 or later)
> Fatal Error by charmc in directory
> /Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp
>    Command clang++ -stdlib=libc++ -I../bin/../include -D__CHARMC__=1
> -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -U_FORTIFY_SOURCE
> -fno-stack-protector -std=c++0x -c ../../src/xlat-i/xi-main.C -o xi-main.o
> returned error code 1
> charmc exiting...
> <builtin>: recipe for target 'xi-main.o' failed
> gmake[1]: *** [xi-main.o] Error 1
> gmake[1]: Leaving directory
> '/Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp'
> Makefile:276: recipe for target 'headers' failed
> gmake: *** [headers] Error 2
>
>
> Is it looking somewhere else for this min version 10.7? in
> src/arch/mpi-darwin-x86_64/conv-mach.sh I changed all the occurrences of
> 10.7 to 10.11
>
> Steve
>
>
>
>
>
> On 22 Jun 2016, at 17:36, Phil Miller 
> <mille121 AT illinois.edu>
>  wrote:
>
> src/arch/mpi-darwin-x86_64/conv-mach.sh
>
>