Charm++ parallel programming system

[Steve Petruzza <spetruzza AT sci.utah.edu>]

Great, that worked.

Also the examples runs correctly. 
Looking forward for the other issue.

Thank you,
Steve


> On 22 Jun 2016, at 17:46, Phil Miller 
> <mille121 AT illinois.edu>
>  wrote:
> 
> Ah, I see the error. In the definition of
> CMK_NATIVE_CXX/CMK_NATIVE_LDXX, we're *missing* the deployment version
> argument. If you add it there, it should be happy.
> 
> On Wed, Jun 22, 2016 at 9:42 AM, Steve Petruzza 
> <spetruzza AT sci.utah.edu>
>  wrote:
>> Thank you Phil,
>> 
>> I tried both with the error is still the same here the dump (single core):
>> Copying src/scripts/Makefile to mpi-darwin-x86_64/tmp
>> Soft-linking over bin
>> Soft-linking over lib
>> Soft-linking over lib_so
>> Soft-linking over include
>> Soft-linking over tmp
>> Generating mpi-darwin-x86_64/tmp/conv-mach-pre.sh
>> Performing '/opt/local/bin/gmake basics OPTS=-optimize -production QUIET=
>> CONFIG_OPTS=--disable-controlpoint --disable-tracing
>> --disable-tracing-commthread --disable-charmdebug --disable-replay
>> --disable-error-checking --disable-stats --enable-tracing' in
>> mpi-darwin-x86_64/tmp
>> /opt/local/bin/gmake charmxi
>> gmake[1]: Entering directory
>> '/Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp'
>> ./configure --disable-controlpoint --disable-tracing
>> --disable-tracing-commthread --disable-charmdebug --disable-replay
>> --disable-error-checking --disable-stats --enable-tracing
>> Error checking is disabled
>> Statistics collection is disabled
>> Charm tracing is enabled
>> Charm tracing communication thread is disabled
>> CharmDebug is disabled
>> Charm record/replay is disabled
>> CCS is enabled
>> Charm control point is disabled
>> Charm LB user data is disabled
>> Charm shrink expand is disabled
>> Setting load balancing timer type as 'double'
>> checking machine name... mpi-darwin-x86_64
>> checking "cp command as"... cp -p
>> checking "C++ compiler as"... "mpicxx -m64 -dynamic -fPIC -fno-common
>> -mmacosx-version-min=10.11     "
>> checking "whether C++ compiler works"... "ok"
>> checking "C++ linker as"... "mpicxx -m64 -dynamic -fPIC -fno-common
>> -mmacosx-version-min=10.11     "
>> checking "whether linker works"... "ok"
>> checking "Native C++ compiler as"... "clang++  -stdlib=libc++ "
>> checking "Sequential C++ compiler as"... "mpicxx -m64 -dynamic -fPIC
>> -fno-common -mmacosx-version-min=10.11 "
>> checking "whether compiler accept -fno-stack-protector"... "ok"
>> checking "whether C++ compiler supports C++11 without flags"... "yes"
>> checking "whether C++ compiler supports C++11 with '-std=c++0x'"... "yes"
>> Setting charm++ envelope refnum field to unsigned short
>> Configuring support for message priorities of arbitrary size (bitvectors)
>> checking "whether compiler generates code for 64-bit"... "yes"
>> checking "whether compiler supports std::alignment_of"... "yes"
>> checking "whether has values.h "... "no"
>> checking "whether has stdint.h "... "yes"
>> checking "whether has malloc.h "... "no"
>> checking "whether has alloca.h "... "yes"
>> checking "whether has regex.h "... "yes"
>> checking "whether long long works"... "yes"
>> checking "whether __int64 works"... "no"
>> checking "whether __int128 (128-bit integer) works"... "yes"
>> checking "whether __int128_t (128-bit integer) works"... "yes"
>> checking "whether long double works"... "yes"
>> checking "whether ucontext has FPU pointer"... "no"
>> checking "whether ucontext has pointer (v_regs) of vector type"... "no"
>> checking "whether ibverbs ibv_port_attr has link_layer field"... "no"
>> checking "whether inline works in C"... "yes"
>> checking "whether C++ signed char and char differ"... "yes"
>> checking "whether C++ allows declaration of varsize array"... "yes"
>> checking "whether typeinfo/typeid works"... "ok"
>> checking "whether std::iterator_traits is defined"... "ok"
>> checking "whether std::distance is defined"... "ok"
>> checking "whether std::inserter is defined"... "ok"
>> checking "whether std::unordered_map is defined"... "ok"
>> checking "whether anon structs are permitted"... "yes"
>> checking "whether operator delete can be overloaded in same class"... "ok"
>> checking "whether offsetof is defined"... "yes"
>> checking "whether GCC x86 assembly works"... "yes"
>> checking "whether GCC x86 assembly for atomic increment works"... "yes"
>> checking "whether GCC IA64 assembly works"... "no"
>> checking "whether asm eieio assembly works"... "no"
>> checking "whether __thread (Thread Local Storage) is supported"... "yes"
>> checking "whether synchronization primitives (__sync_add_and_fetch) works 
>> in
>> C"... "yes"
>> checking "whether synchronization primitives (__sync_synchronize) works in
>> C"... "yes"
>> checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works
>> in C"... "no"
>> checking "whether switching TLS register (64-bit) is supported"... "no"
>> checking "whether build on MPI"... "yes"
>> checking "whether need to specify MPI library"... "no"
>> checking "whether MPI_Init_thread is supported"... "yes"
>> checking "whether macro conflicts occurs due to C++ MPI bindings"... "no"
>> checking "whether getrusage accepts RUSAGE_THREAD"... "no"
>> checking "whether has asctime"... "yes"
>> checking "whether has log2"... "yes"
>> checking "whether has sqrtf"... "yes"
>> checking "whether has fabsf"... "yes"
>> checking "whether has mkstemp"... "yes"
>> checking "whether has system"... "yes"
>> checking "whether has sync()"... "yes"
>> checking "whether has fsync()"... "yes"
>> checking "whether has fdatasync()"... "no"
>> checking "whether has sbrk"... "yes"
>> checking "whether has _setjmp/_longjmp"... "yes"
>> checking "whether has mstats"... "no"
>> checking "whether has mallinfo"... "no"
>> checking "whether has popen"... "yes"
>> checking "whether has poll"... "yes"
>> checking "whether has getpagesize"... "yes"
>> checking "whether has getpid"... "yes"
>> checking "whether has kill"... "yes"
>> checking "whether has setpriority"... "yes"
>> checking "whether to use signal-safe system() "... "no"
>> checking "whether sched_setaffinity call exists"... "no"
>> checking "whether pthread_setaffinity_np call exists"... "no"
>> checking "whether pthread_spin_lock exists"... "no"
>> checking "whether bindprocessor call exists"... "no"
>> checking "whether dlopen links without -ldl"... "yes"
>> checking "whether dlopen links with -ldl"... "yes"
>> checking "whether gethostname call exists"... "yes"
>> checking "whether getProcAddress works"... "no"
>> checking "whether has socklen_t"... "yes"
>> checking "whether getifaddrs call exists"... "yes"
>> checking "whether the mmap() syscall exists"... "yes"
>> checking "whether mmap() accepts MAP_ANON"... "yes"
>> checking "whether mmap() accepts MAP_NORESERVE"... "yes"
>> checking "whether has get_myaddress"... "no"
>> checking "whether has mprotect"... "yes"
>> checking "whether glibc backtrace works"... "yes"
>> checking "whether has sleep "... "yes"
>> checking "whether has usleep "... "yes"
>> checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "no"
>> checking "whether has zlib"... "yes"
>> checking "whether has elf.h "... "no"
>> checking "whether has Multiprocessing.h for Apple "... "no"
>> checking "whether ntohl is available"... "yes"
>> checking "whether has libjpeg"... "yes"
>> checking "whether Python is installed"... "yes"
>> checking "whether can build shared library"... "yes"
>> checking "whether can build shared library with MPI"... "yes"
>> checking for sync... sync
>> checking "F77 compiler as"... "g77 "
>> checking "whether Fortran 77 compiler works"... "no"
>> checking "F90 compiler as"... "f90 "
>> checking "whether Fortran 90 compiler works"... "no"
>> checking subroutine name used by Fortran 90 compiler... "Fortran compiler
>> not working"
>> configure: creating ./config.status
>> config.status: creating libs/ck-libs/ampi/ampiCC
>> config.status: creating conv-autoconfig.h
>> config.status: conv-autoconfig.h is unchanged
>> config.status: executing config-cleanup commands
>> config.status: executing default commands
>> ../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c
>> -o xi-main.o ../../src/xlat-i/xi-main.C
>> clang: error: invalid deployment target for -stdlib=libc++ (requires OS X
>> 10.7 or later)
>> Fatal Error by charmc in directory
>> /Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp
>>   Command clang++ -stdlib=libc++ -I../bin/../include -D__CHARMC__=1
>> -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -U_FORTIFY_SOURCE
>> -fno-stack-protector -std=c++0x -c ../../src/xlat-i/xi-main.C -o xi-main.o
>> returned error code 1
>> charmc exiting...
>> <builtin>: recipe for target 'xi-main.o' failed
>> gmake[1]: *** [xi-main.o] Error 1
>> gmake[1]: Leaving directory
>> '/Users/steve/Research/SCI/workspace/charm/mpi-darwin-x86_64/tmp'
>> Makefile:276: recipe for target 'headers' failed
>> gmake: *** [headers] Error 2
>> 
>> 
>> Is it looking somewhere else for this min version 10.7? in
>> src/arch/mpi-darwin-x86_64/conv-mach.sh I changed all the occurrences of
>> 10.7 to 10.11
>> 
>> Steve
>> 
>> 
>> 
>> 
>> 
>> On 22 Jun 2016, at 17:36, Phil Miller 
>> <mille121 AT illinois.edu>
>>  wrote:
>> 
>> src/arch/mpi-darwin-x86_64/conv-mach.sh
>> 
>>