Charm++ parallel programming system

[Jozsef Bakosi <jbakosi AT lanl.gov>]

That works! Thanks so much for the fast fixes.

Jozsef

On 10.29.2018 18:53, Evan Ramos wrote:
> I think I've worked out the issues. Primarily, our configure script was
> overwriting the destinations of two symlinked files instead of their
> sources, causing the link to be broken on Alpine and leaving the build
> system out of sync. In my testing this patch fixes the issue and the
> Makefile should now avoid compiling CharmDebug when disabled.
> https://charm.cs.illinois.edu/gerrit/c/charm/+/4752
> 
> --
> Evan A. Ramos
> Software Engineer
> Charmworks, Inc.
> 
> 
> On Mon, Oct 29, 2018 at 5:42 PM Jozsef Bakosi 
> <jbakosi AT lanl.gov>
>  wrote:
> 
> > Thank you sop much for being on top of it so quick!
> >
> > I'm using alpine:edge and trying to get charm++ compile inside the
> > following docker image, which may give you some idea what used to work
> > (with v6.8) and using what packages (and a work-around for lib/cpp)
> > inside the image.
> >
> > https://github.com/quinoacomputing/buildenv/blob/master/alpine-gnu
> >
> > Thanks,
> > J
> >
> > On 10.29.2018 17:36, Evan Ramos wrote:
> > > Thanks for the quick reply! This output suggests that configure.ac's
> > code
> > > to generate conv-mach-opt.{sh,mak} is not functioning properly. This may
> > > come down to differences between sed variants. I am spinning up an 
> > > Alpine
> > > Linux VM to debug this.
> > >
> > > --
> > > Evan A. Ramos
> > > Software Engineer
> > > Charmworks, Inc.
> > >
> > >
> > > On Mon, Oct 29, 2018 at 5:29 PM Jozsef Bakosi 
> > > <jbakosi AT lanl.gov>
> > >  wrote:
> > >
> > > > On 10.29.2018 17:26, Evan Ramos wrote:
> > > > > If you run `grep -i charmdebug config.log charmconfig.out
> > > > conv-mach-opt.*`,
> > > > > what is printed?
> > > >
> > > > /home/quinoa/tpl/gnu/charm/mpi-linux-x86_64/tmp # grep -i charmdebug
> > > > config.log charmconfig.out conv-mach-opt.*
> > > > config.log:  $ ./configure --disable-controlpoint --disable-tracing
> > > > --disable-tracing-commthread --disable-charmdebug --disable-replay
> > > > --disable-error-checking --disable-stats --enable-error-checking
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:| #define CMK_CHARMDEBUG 0
> > > > config.log:#define CMK_CHARMDEBUG 0
> > > > charmconfig.out:CharmDebug is disabled
> > > >
> > > >
> > > > >
> > > > > --
> > > > > Evan A. Ramos
> > > > > Software Engineer
> > > > > Charmworks, Inc.
> > > > >
> > > > >
> > > > > On Mon, Oct 29, 2018 at 4:45 PM Jozsef Bakosi 
> > > > > <jbakosi AT lanl.gov>
> > wrote:
> > > > >
> > > > > > On 10.29.2018 12:38, Evan Ramos wrote:
> > > > > > > Hi Jozsef,
> > > > > > >
> > > > > > > I believe this patch should fix the __malloc_hook problem:
> > > > > > > https://charm.cs.illinois.edu/gerrit/c/charm/+/4744
> > > > > >
> > > > > > Applying the patch and re-building with
> > > > > >
> > > > > > $ ./build charm++ mpi-linux-x86_64 --enable-error-checking
> > > > --build-shared
> > > > > > --with-production -j36 -w -fpermissive -O3 -DNDEBUG
> > > > > >
> > > > > > I get, in tmp/config.log:
> > > > > >
> > > > > >   $ ./configure --disable-controlpoint --disable-tracing
> > > > > > --disable-tracing-commthread --disable-charmdebug --disable-replay
> > > > > > --disable-error-checking --disable-stats --enable-error-checking
> > > > > >
> > > > > > and the error:
> > > > > >
> > > > > > In file included from memory.C:677:
> > > > > > memory-charmdebug.c:30:2: error: #error "charmdebug is not enabled
> > > > (e.g.
> > > > > > when building with-production)"
> > > > > >  #error "charmdebug is not enabled (e.g. when building
> > > > with-production)"
> > > > > >   ^~~~~
> > > > > >
> > > > > > I guess, charmdebug is disabled even without me passing
> > > > > > --disable-charmdebug to it, so that turns out to be a problem.
> > > > > >
> > > > > > > I am confused by the charmdebug error. I looked at the build
> > system
> > > > and
> > > > > > > don't see how memory-charmdebug would be included from any file
> > if
> > > > > > > --disable-charmdebug was passed. Does the configure script say
> > > > > > "CharmDebug
> > > > > > > is disabled"?
> > > > > >
> > > > > > Here are the first few lines of tmp/config.log for when I
> > explicitly
> > > > > > disable charmdebug:
> > > > > >
> > > > > > ==========
> > > > > > This file contains any messages produced by compilers while
> > > > > > running configure, to aid debugging if configure makes a mistake.
> > > > > >
> > > > > > It was created by Charm++ configure 60900, which was
> > > > > > generated by GNU Autoconf 2.69.  Invocation command line was
> > > > > >
> > > > > >   $ ./configure --disable-controlpoint --disable-tracing
> > > > > > --disable-tracing-commthread --disable-charmdebug --disable-replay
> > > > > > --disable-error-checking --disable-stats --enable-error-checking
> > > > > > --disable-charmdebug
> > > > > > ==========
> > > > > >
> > > > > > I guess --disable-charmdebug is triggered by --with-production, so
> > both
> > > > > > will do the same and for some reason this breaks on alpine.
> > > > > >
> > > > > > Thanks,
> > > > > > Jozsef