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Subject: Charm++ parallel programming system
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- From: "Tengxiang Li (tl9u22)" <tl9u22 AT soton.ac.uk>
- To: "charm AT cs.illinois.edu" <charm AT cs.illinois.edu>
- Subject: [charm] Some issue about compiling NAMD_2.14
- Date: Tue, 20 Jun 2023 16:11:14 +0000
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Dear Sir or Madam:
Hopes you are well. My name is Tengxiang and I’m doing with computing chemistry in University Southampton. Recently I’m trying to do reproduction about a paper which based on the NAME_2.14, and there is something wrong when I am compiling it. When I am compiling CHARM++ 6.10.2, run ‘./build charm++ multicore-linux-x86_64 --with-production’, there is an error about ‘threads.C:1630:29: error: function ‘int swapJcontext(uJcontext_t*, const uJcontext_t*)’ can never be inlined because it uses setjmp static CMI_FORCE_INLINE int swapJcontext(uJcontext_t *oucp, const uJcontext_t *ucp)’. And there is a file truncated: Fatal Error by charmc in directory /home/tengxiang/MLCV/NAMD_2.14_Source/charm-6.10.2/multicore-linux-x86_64/tmp libthreads-context.o: file not recognized: File truncated. I tried to search about this issue but couldn’t find useful information. My environment is Ubuntu 20.04.6 LTS (GNU/Linux 5.4.0-146-generic x86_64), gcc version 8.4.0 (Ubuntu 8.4.0-3ubuntu2). My reference is: https://pubs.acs.org/doi/suppl/10.1021/acs.jcim.1c01010/suppl_file/ci1c01010_si_001.pdf and https://www.ks.uiuc.edu/Development/Download/download.cgi. Could you give me some induction about how to solve this problem? Many thanks for your help.
Many thanks, Tengxiang
Tengxiang Li Computational Chemistry School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK Tel. +44 (0) 7774 145130
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- [charm] Some issue about compiling NAMD_2.14, Tengxiang Li (tl9u22), 06/20/2023
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