Support for users of CCG software closed 7-27-20

["Sammons, Mark" <mssammon AT illinois.edu>]

Hi, Rayid.

It looks like the database is missing a file for a record/text that Curator 
has already processed. 
Can you try setting the force update flag to 'true' with the text that causes 
the error, and see if it fixes the problem?

Regards,

Mark
________________________________________
From: 
illinois-ml-nlp-users-bounces AT cs.uiuc.edu
 
[illinois-ml-nlp-users-bounces AT cs.uiuc.edu]
 on behalf of Rayid Ghani 
[rayidghani AT gmail.com]
Sent: Monday, July 23, 2012 7:42 PM
To: 
illinois-ml-nlp-users AT cs.uiuc.edu
Subject: [Illinois-ml-nlp-users] curator errors

Do you know what could be calling this? I'm calling curator with a
python client and  the error seems to be coming from the NER
annotator.
-rayid

 0 flags. Meyersdale Andy Griffith dies at the age of 86
00:35:53.183 [pool-1-thread-19] WARN
e.i.c.cogcomp.curator.CuratorHandler - ner :
org.apache.thrift.TApplicationException: Internal error processing
labelRecord
00:35:53.240 [pool-1-thread-9] WARN
e.i.cs.cogcomp.archive.DatabaseStore - Error creating prepared
statements
org.h2.jdbc.JdbcSQLException: File not found:
/home/ubuntu/curator/data/curator/database.lobs.db/5.lobs.db/213.lobs.db/382222.t15.lob.db
[90124-118]
        at org.h2.message.Message.getSQLException(Message.java:105)
[h2-1.1.118.jar:1.1.118]
        at org.h2.message.Message.getSQLException(Message.java:116)
[h2-1.1.118.jar:1.1.118]
        at org.h2.message.Message.getSQLException(Message.java:75)
[h2-1.1.118.jar:1.1.118]
        at org.h2.engine.Database.openFile(Database.java:478)
[h2-1.1.118.jar:1.1.118]
        at org.h2.value.ValueLob.getInputStream(ValueLob.java:647)
[h2-1.1.118.jar:1.1.118]
        at org.h2.jdbc.JdbcBlob.getBytes(JdbcBlob.java:100)
[h2-1.1.118.jar:1.1.118]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseStore.getById(DatabaseStore.java:179)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseArchive.getById(DatabaseArchive.java:137)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseArchive.get(DatabaseArchive.java:143)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.getRecord(CuratorHandler.java:455)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.getRecord(CuratorHandler.java:1085)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.provide(CuratorHandler.java:982)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.thrift.curator.Curator$Processor$provide.process(Curator.java:1093)
[curator-interfaces.jar:na]
        at 
edu.illinois.cs.cogcomp.thrift.curator.Curator$Processor.process(Curator.java:1018)
[curator-interfaces.jar:na]
        at 
org.apache.thrift.server.TNonblockingServer$FrameBuffer.invoke(TNonblockingServer.java:678)
[libthrift.jar:na]
        at 
org.apache.thrift.server.THsHaServer$Invocation.run(THsHaServer.java:291)
[libthrift.jar:na]
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
[na:1.6.0_22]
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
[na:1.6.0_22]
        at java.lang.Thread.run(Thread.java:679) [na:1.6.0_22]
00:35:53.240 [pool-1-thread-9] ERROR
e.i.cs.cogcomp.archive.DatabaseStore - Error getting datum for
identifier: e94b331ee23aef27a6f85d68f881c187d6ccb1c4
00:35:53.241 [pool-1-thread-9] ERROR
e.i.c.cogcomp.curator.CuratorHandler - Error retrieving from Archive.
edu.illinois.cs.cogcomp.archive.ArchiveException: Underlying database error
        at 
edu.illinois.cs.cogcomp.archive.DatabaseStore.getById(DatabaseStore.java:197)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseArchive.getById(DatabaseArchive.java:137)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseArchive.get(DatabaseArchive.java:143)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.getRecord(CuratorHandler.java:455)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.getRecord(CuratorHandler.java:1085)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.curator.CuratorHandler.provide(CuratorHandler.java:982)
[curator-server.jar:na]
        at 
edu.illinois.cs.cogcomp.thrift.curator.Curator$Processor$provide.process(Curator.java:1093)
[curator-interfaces.jar:na]
        at 
edu.illinois.cs.cogcomp.thrift.curator.Curator$Processor.process(Curator.java:1018)
[curator-interfaces.jar:na]
        at 
org.apache.thrift.server.TNonblockingServer$FrameBuffer.invoke(TNonblockingServer.java:678)
[libthrift.jar:na]
        at 
org.apache.thrift.server.THsHaServer$Invocation.run(THsHaServer.java:291)
[libthrift.jar:na]
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
[na:1.6.0_22]
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
[na:1.6.0_22]
        at java.lang.Thread.run(Thread.java:679) [na:1.6.0_22]
Caused by: org.h2.jdbc.JdbcSQLException: File not found:
/home/ubuntu/curator/data/curator/database.lobs.db/5.lobs.db/213.lobs.db/382222.t15.lob.db
[90124-118]
        at org.h2.message.Message.getSQLException(Message.java:105)
[h2-1.1.118.jar:1.1.118]
        at org.h2.message.Message.getSQLException(Message.java:116)
[h2-1.1.118.jar:1.1.118]
        at org.h2.message.Message.getSQLException(Message.java:75)
[h2-1.1.118.jar:1.1.118]
        at org.h2.engine.Database.openFile(Database.java:478)
[h2-1.1.118.jar:1.1.118]
        at org.h2.value.ValueLob.getInputStream(ValueLob.java:647)
[h2-1.1.118.jar:1.1.118]
        at org.h2.jdbc.JdbcBlob.getBytes(JdbcBlob.java:100)
[h2-1.1.118.jar:1.1.118]
        at 
edu.illinois.cs.cogcomp.archive.DatabaseStore.getById(DatabaseStore.java:179)
[curator-server.jar:na]
        ... 12 common frames omitted
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