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Subject: Charm++ parallel programming system

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[charm] Charm++ tests failure


Chronological Thread 
  • From: pellegrini <pellegrini AT ill.fr>
  • To: charm AT cs.uiuc.edu
  • Cc: Mark JOHNSON <johnson AT ill.fr>, mudingay AT ill.fr
  • Subject: [charm] Charm++ tests failure
  • Date: Thu, 10 Jun 2010 18:11:12 +0200
  • List-archive: <http://lists.cs.uiuc.edu/pipermail/charm>
  • List-id: CHARM parallel programming system <charm.cs.uiuc.edu>

Hello,

we are trying to install NAMD on our new DALCO cluster made of 43 8-cores Intel Xeon cpus (Nehalem) connected through InfiniBand. We followed the installation notes but we fails to make charm++ work. The build was successful but when performing some tests we got no results. We are using charm-6.1.3 that comes along
with NAMD-2.7b2. We did the following from the NAMD directory:

1 cd charm-6.1.3
2 env MPICXX=mpicxx ./build charm++ net-linux-x86_64 pgcc --basedir=/usr/pgi/linux86-64/2010/mpi/mvapich --no-build-shared pgf90 ibverbs --no-build-shared -j32 -O2 -DCMK_OTIMIZE --> the build was successful
3 cd tests/charm++/megatests
4 make clean
5 make pgm --> the make was successfull
6 charmrun ++local +p4 ./pgm and from here we get:

Charmrun> IBVERBS version of charmrun
Charmrun: Bad initnode data length. Aborting

Based on this, the build of NAMD works but once again the tests are failing. We think that both failures are related.

Would you have any idea of what is going wrong or if we did some mistakes when building charm++ ?

thank you very much

best regards

Eric Pellegrini








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